(36 nodes) Other types of O-glycan biosynthesis network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100176713	Polypeptide N-acetylgalactosaminyltransferase. (522 aa)
	LOC778625	beta-1,3-N-acetylglucosaminyltransferase lunatic fringe. (311 aa)
	F6ZPY6_CIOIN	Uncharacterized protein. (327 aa)
	LOC100175975	Polypeptide N-acetylgalactosaminyltransferase. (631 aa)
	F6X2H2_CIOIN	Uncharacterized protein. (323 aa)
	F6R6G1_CIOIN	Polypeptide N-acetylgalactosaminyltransferase. (571 aa)
	LOC100185960	Beta-1,4-galactosyltransferase 1. (372 aa)
	F6UGJ2_CIOIN	Glyco_trans_2-like domain-containing protein. (283 aa)
	F6TSL2_CIOIN	Polypeptide N-acetylgalactosaminyltransferase. (577 aa)
	F7AB40_CIOIN	Uncharacterized protein. (375 aa)
	F6XCE2_CIOIN	Polypeptide N-acetylgalactosaminyltransferase. (544 aa)
	F6PLX9_CIOIN	Uncharacterized protein. (389 aa)
	F7A738_CIOIN	Uncharacterized protein. (247 aa)
	F6TXS7_CIOIN	Polypeptide N-acetylgalactosaminyltransferase. (570 aa)
	F7B6X8_CIOIN	Polypeptide N-acetylgalactosaminyltransferase. (601 aa)
	F6XVE4_CIOIN	Polypeptide N-acetylgalactosaminyltransferase. (498 aa)
	LOC100181205	Protein O-mannosyl-transferase 1-like isoform X1. (664 aa)
	F6XTL0_CIOIN	Uncharacterized protein. (310 aa)
	F6TG24_CIOIN	Fe2OG dioxygenase domain-containing protein. (735 aa)
	LOC100176443	Xyloside xylosyltransferase 1. (397 aa)
	Aer61	Uncharacterized protein. (416 aa)
	LOC778622	Fringe. (381 aa)
	LOC100181252-2	Uncharacterized protein. (413 aa)
	F7ABL1_CIOIN	Uncharacterized protein. (454 aa)
	fut13	Fut13 protein precursor. (434 aa)
	F6RNX9_CIOIN	Uncharacterized protein. (387 aa)
	F6ZXT3_CIOIN	PMT_4TMC domain-containing protein. (202 aa)
	LOC778624	beta-1,3-N-acetylglucosaminyltransferase lunatic fringe. (320 aa)
	LOC100176976	Uncharacterized protein. (515 aa)
	LOC778626	Fringe isoform X1. (318 aa)
	H2XKR8_CIOIN	Uncharacterized protein. (137 aa)
	LOC100183994	Procollagen galactosyltransferase 1 isoform X1. (594 aa)
	B4galt	Uncharacterized protein. (413 aa)
	H2XU54_CIOIN	Glyco_trans_2-like domain-containing protein. (254 aa)
	H2Y0L1_CIOIN	CAP10 domain-containing protein. (242 aa)
	H2Y378_CIOIN	Uncharacterized protein. (155 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Aer61	LOC100176976	ENSCINP00000017051	ENSCINP00000027667	Uncharacterized protein.	Uncharacterized protein.	0.904
F6PLX9_CIOIN	H2Y0L1_CIOIN	ENSCINP00000009868	ENSCINP00000035445	Uncharacterized protein.	CAP10 domain-containing protein.	0.496
F6PLX9_CIOIN	LOC100176443	ENSCINP00000009868	ENSCINP00000016452	Uncharacterized protein.	Xyloside xylosyltransferase 1.	0.470
F6PLX9_CIOIN	fut13	ENSCINP00000009868	ENSCINP00000025125	Uncharacterized protein.	Fut13 protein precursor.	0.955
F6R6G1_CIOIN	H2XKR8_CIOIN	ENSCINP00000006394	ENSCINP00000030250	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.920
F6RNX9_CIOIN	H2Y378_CIOIN	ENSCINP00000025426	ENSCINP00000036363	Uncharacterized protein.	Uncharacterized protein.	0.906
F6TG24_CIOIN	LOC100183994	ENSCINP00000016152	ENSCINP00000031583	Fe2OG dioxygenase domain-containing protein.	Procollagen galactosyltransferase 1 isoform X1.	0.975
F6TSL2_CIOIN	H2XKR8_CIOIN	ENSCINP00000008890	ENSCINP00000030250	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.909
F6TXS7_CIOIN	H2XKR8_CIOIN	ENSCINP00000010314	ENSCINP00000030250	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.912
F6UGJ2_CIOIN	H2XKR8_CIOIN	ENSCINP00000008833	ENSCINP00000030250	Glyco_trans_2-like domain-containing protein.	Uncharacterized protein.	0.909
F6XCE2_CIOIN	H2XKR8_CIOIN	ENSCINP00000009444	ENSCINP00000030250	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.913
F6XTL0_CIOIN	LOC100185960	ENSCINP00000015929	ENSCINP00000007666	Uncharacterized protein.	Beta-1,4-galactosyltransferase 1.	0.906
F6XVE4_CIOIN	H2XKR8_CIOIN	ENSCINP00000010786	ENSCINP00000030250	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.918
F6ZXT3_CIOIN	LOC100181205	ENSCINP00000026045	ENSCINP00000013132	PMT_4TMC domain-containing protein.	Protein O-mannosyl-transferase 1-like isoform X1.	0.985
F7ABL1_CIOIN	fut13	ENSCINP00000023077	ENSCINP00000025125	Uncharacterized protein.	Fut13 protein precursor.	0.616
F7B6X8_CIOIN	H2XKR8_CIOIN	ENSCINP00000010686	ENSCINP00000030250	Polypeptide N-acetylgalactosaminyltransferase.	Uncharacterized protein.	0.913
H2XKR8_CIOIN	F6R6G1_CIOIN	ENSCINP00000030250	ENSCINP00000006394	Uncharacterized protein.	Polypeptide N-acetylgalactosaminyltransferase.	0.920
H2XKR8_CIOIN	F6TSL2_CIOIN	ENSCINP00000030250	ENSCINP00000008890	Uncharacterized protein.	Polypeptide N-acetylgalactosaminyltransferase.	0.909
H2XKR8_CIOIN	F6TXS7_CIOIN	ENSCINP00000030250	ENSCINP00000010314	Uncharacterized protein.	Polypeptide N-acetylgalactosaminyltransferase.	0.912
H2XKR8_CIOIN	F6UGJ2_CIOIN	ENSCINP00000030250	ENSCINP00000008833	Uncharacterized protein.	Glyco_trans_2-like domain-containing protein.	0.909