STRINGSTRING
tardbp tardbp F6V6D5_CIOIN F6V6D5_CIOIN F6SID0_CIOIN F6SID0_CIOIN LOC100187540 LOC100187540 LOC100176230 LOC100176230 LOC100178052 LOC100178052 F6WRF3_CIOIN F6WRF3_CIOIN LOC101242392 LOC101242392 LOC100182407 LOC100182407 LOC100184300 LOC100184300 F6XMT9_CIOIN F6XMT9_CIOIN F6TMY9_CIOIN F6TMY9_CIOIN LOC100177596 LOC100177596 F6SZZ3_CIOIN F6SZZ3_CIOIN F7A6B8_CIOIN F7A6B8_CIOIN F6ZML6_CIOIN F6ZML6_CIOIN F7BH80_CIOIN F7BH80_CIOIN F6YTA1_CIOIN F6YTA1_CIOIN LOC100182767 LOC100182767 F7AY15_CIOIN F7AY15_CIOIN LOC100181450 LOC100181450 F6TIU3_CIOIN F6TIU3_CIOIN F6ZKW1_CIOIN F6ZKW1_CIOIN F7B4V3_CIOIN F7B4V3_CIOIN F6YFY0_CIOIN F6YFY0_CIOIN F6TST6_CIOIN F6TST6_CIOIN F6RMU1_CIOIN F6RMU1_CIOIN F6PM95_CIOIN F6PM95_CIOIN LOC100185146 LOC100185146 LOC100182924 LOC100182924 LOC100183816 LOC100183816 F6RWU5_CIOIN F6RWU5_CIOIN LOC100182155 LOC100182155 LOC100181332 LOC100181332 F6T2X1_CIOIN F6T2X1_CIOIN LOC101243211 LOC101243211 LOC100184010 LOC100184010 LOC100187398 LOC100187398 F6QKM5_CIOIN F6QKM5_CIOIN LOC100186210 LOC100186210 F6WW70_CIOIN F6WW70_CIOIN F6VCT2_CIOIN F6VCT2_CIOIN F6T7M7_CIOIN F6T7M7_CIOIN F6ZID9_CIOIN F6ZID9_CIOIN LOC100178569 LOC100178569 F6XF93_CIOIN F6XF93_CIOIN LOC100186564 LOC100186564 LOC100175786 LOC100175786 F6XS77_CIOIN F6XS77_CIOIN LOC100187236 LOC100187236 F6ZF56_CIOIN F6ZF56_CIOIN F6PK54_CIOIN F6PK54_CIOIN F6S0L5_CIOIN F6S0L5_CIOIN LOC100177747 LOC100177747 F6U8I2_CIOIN F6U8I2_CIOIN F7AWZ4_CIOIN F7AWZ4_CIOIN zf(rbz)-2 zf(rbz)-2 LOC100183767 LOC100183767 LOC100185410 LOC100185410 F7AF81_CIOIN F7AF81_CIOIN F6TBC4_CIOIN F6TBC4_CIOIN LOC100184979 LOC100184979 LOC100181701 LOC100181701 F7BEQ8_CIOIN F7BEQ8_CIOIN F6V7G7_CIOIN F6V7G7_CIOIN F6YZ22_CIOIN F6YZ22_CIOIN F6QQ49_CIOIN F6QQ49_CIOIN F6YAV6_CIOIN F6YAV6_CIOIN F7BI62_CIOIN F7BI62_CIOIN F6ZBK7_CIOIN F6ZBK7_CIOIN F7B819_CIOIN F7B819_CIOIN LOC100187159 LOC100187159 F6ZIK8_CIOIN F6ZIK8_CIOIN F6WHY6_CIOIN F6WHY6_CIOIN LOC100183305 LOC100183305 F6W3V6_CIOIN F6W3V6_CIOIN F6PNC3_CIOIN F6PNC3_CIOIN LOC100184417 LOC100184417 LOC100179671 LOC100179671 LOC100177882 LOC100177882 H2XKN7_CIOIN H2XKN7_CIOIN LOC104266248 LOC104266248 H2XRD0_CIOIN H2XRD0_CIOIN H2XSL9_CIOIN H2XSL9_CIOIN H2XSX9_CIOIN H2XSX9_CIOIN LOC100178367 LOC100178367 H2XTF8_CIOIN H2XTF8_CIOIN LOC100186689 LOC100186689 H2XUS5_CIOIN H2XUS5_CIOIN H2XWF9_CIOIN H2XWF9_CIOIN LOC100184548 LOC100184548 H2XYL5_CIOIN H2XYL5_CIOIN LOC100181775 LOC100181775 LOC100182886 LOC100182886 H2Y0Q6_CIOIN H2Y0Q6_CIOIN H2Y1Q5_CIOIN H2Y1Q5_CIOIN H2Y233_CIOIN H2Y233_CIOIN H2Y2U3_CIOIN H2Y2U3_CIOIN H2Y3Q2_CIOIN H2Y3Q2_CIOIN
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tardbpCi-Tardbp protein. (440 aa)
F6V6D5_CIOINNTP_transferase domain-containing protein. (267 aa)
F6SID0_CIOINEukaryotic translation initiation factor 3 subunit E; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (443 aa)
LOC100187540Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (235 aa)
LOC100176230WD_REPEATS_REGION domain-containing protein. (328 aa)
LOC100178052Transforming acidic coiled-coil-containing protein 3. (727 aa)
F6WRF3_CIOIN60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (501 aa)
LOC101242392Eukaryotic translation initiation factor 4E type 2; Belongs to the eukaryotic initiation factor 4E family. (219 aa)
LOC100182407Protein SEC13 homolog; Belongs to the WD repeat SEC13 family. (312 aa)
LOC100184300Uncharacterized protein. (147 aa)
F6XMT9_CIOINUncharacterized protein. (261 aa)
F6TMY9_CIOINUncharacterized protein. (401 aa)
LOC100177596Eukaryotic initiation factor 4A-I; Belongs to the DEAD box helicase family. (430 aa)
F6SZZ3_CIOINUncharacterized protein. (192 aa)
F7A6B8_CIOINUncharacterized protein. (523 aa)
F6ZML6_CIOINWD_REPEATS_REGION domain-containing protein. (135 aa)
F7BH80_CIOINUncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (482 aa)
F6YTA1_CIOINUncharacterized protein. (830 aa)
LOC100182767Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (700 aa)
F7AY15_CIOINUncharacterized protein. (309 aa)
LOC100181450Eukaryotic translation initiation factor 3 subunit D; mRNA cap-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. In the eIF-3 complex, eif3d specifically recognizes and binds the 7- methylguanosine cap of a subset of mRNAs. (554 aa)
F6TIU3_CIOINEukaryotic translation initiation factor 3 subunit I; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (326 aa)
F6ZKW1_CIOINGTP-binding nuclear protein Ran; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (161 aa)
F7B4V3_CIOINUncharacterized protein; Belongs to the eukaryotic initiation factor 4E family. (225 aa)
F6YFY0_CIOINTr-type G domain-containing protein. (473 aa)
F6TST6_CIOINLactamase_B domain-containing protein. (355 aa)
F6RMU1_CIOINImportin N-terminal domain-containing protein. (883 aa)
F6PM95_CIOINWD_REPEATS_REGION domain-containing protein. (322 aa)
LOC100185146RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (164 aa)
LOC100182924Nucleoporin p58/p45. (478 aa)
LOC100183816Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (306 aa)
F6RWU5_CIOINMIF4G domain-containing protein. (689 aa)
LOC100182155Uncharacterized protein. (427 aa)
LOC100181332Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (814 aa)
F6T2X1_CIOINUncharacterized protein; Belongs to the WD repeat SEC13 family. (367 aa)
LOC101243211Translation initiation factor eIF-2B subunit alpha; Belongs to the eIF-2B alpha/beta/delta subunits family. (305 aa)
LOC100184010mRNA export factor. (361 aa)
LOC100187398Eukaryotic translation initiation factor 1A, X-chromosomal; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (188 aa)
F6QKM5_CIOINMago-bind domain-containing protein. (209 aa)
LOC100186210Nucleoporin NDC1. (646 aa)
F6WW70_CIOINUncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (404 aa)
F6VCT2_CIOINUncharacterized protein. (1190 aa)
F6T7M7_CIOINUncharacterized protein. (492 aa)
F6ZID9_CIOINElongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (469 aa)
LOC100178569ATP-dependent RNA helicase DDX19B. (484 aa)
F6XF93_CIOINUncharacterized protein. (410 aa)
LOC100186564Protein arginine N-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. (627 aa)
LOC100175786Ribonucleases P/MRP protein subunit POP1 isoform X1. (985 aa)
F6XS77_CIOINSmg4_UPF3 domain-containing protein. (197 aa)
LOC100187236Uncharacterized protein. (468 aa)
F6ZF56_CIOINUncharacterized protein. (521 aa)
F6PK54_CIOINUncharacterized protein. (331 aa)
F6S0L5_CIOINUncharacterized protein. (985 aa)
LOC100177747Nuclear pore protein. (828 aa)
F6U8I2_CIOINNuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (236 aa)
F7AWZ4_CIOINC3H1-type domain-containing protein. (321 aa)
zf(rbz)-2Uncharacterized protein. (1304 aa)
LOC100183767Uncharacterized protein LOC100183767. (183 aa)
LOC100185410MPN domain-containing protein. (204 aa)
F7AF81_CIOINUncharacterized protein. (1037 aa)
F6TBC4_CIOINUncharacterized protein. (347 aa)
LOC100184979Nucleoporin Nup37. (329 aa)
LOC100181701Gem-associated protein 2. (323 aa)
F7BEQ8_CIOINMIF4G domain-containing protein. (212 aa)
F6V7G7_CIOINSUI1 domain-containing protein. (109 aa)
F6YZ22_CIOINExportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family. (697 aa)
F6QQ49_CIOINUncharacterized protein. (1164 aa)
F6YAV6_CIOINTudor domain-containing protein. (248 aa)
F7BI62_CIOINNTP_transferase domain-containing protein. (453 aa)
F6ZBK7_CIOINUncharacterized protein. (610 aa)
F7B819_CIOINUncharacterized protein. (210 aa)
LOC100187159Uncharacterized protein; Belongs to the eIF-2B alpha/beta/delta subunits family. (356 aa)
F6ZIK8_CIOINUncharacterized protein. (184 aa)
F6WHY6_CIOINUncharacterized protein. (223 aa)
LOC10018330560S ribosomal protein L30. (118 aa)
F6W3V6_CIOINRRM domain-containing protein. (196 aa)
F6PNC3_CIOINUncharacterized protein. (1086 aa)
LOC100184417Exportin-1. (1071 aa)
LOC100179671Gem-associated protein 7-like. (86 aa)
LOC100177882Ribonuclease P protein subunit p30-like. (270 aa)
H2XKN7_CIOINUncharacterized protein. (116 aa)
LOC104266248Uncharacterized protein. (162 aa)
H2XRD0_CIOINPOP4 domain-containing protein. (197 aa)
H2XSL9_CIOINUncharacterized protein. (249 aa)
H2XSX9_CIOINElongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (460 aa)
LOC100178367Small ubiquitin-related modifier. (99 aa)
H2XTF8_CIOINUncharacterized protein. (231 aa)
LOC100186689PWI domain-containing protein. (159 aa)
H2XUS5_CIOINUncharacterized protein. (250 aa)
H2XWF9_CIOINUncharacterized protein. (488 aa)
LOC100184548NTF2-related export protein-like. (139 aa)
H2XYL5_CIOINUncharacterized protein. (257 aa)
LOC100181775Elongation factor 1-alpha; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (467 aa)
LOC100182886Ribonuclease P protein subunit p21. (132 aa)
H2Y0Q6_CIOINEukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (272 aa)
H2Y1Q5_CIOINSAP domain-containing protein. (353 aa)
H2Y233_CIOINNuclear cap-binding protein subunit 2. (185 aa)
H2Y2U3_CIOINEukaryotic translation initiation factor 3 subunit J; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (240 aa)
H2Y3Q2_CIOINBtz domain-containing protein. (394 aa)
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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