90 items (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Zf(ring)-14	RING-type domain-containing protein. (879 aa)
	F6SFZ9_CIOIN	RING-type domain-containing protein. (139 aa)
	ci-zf(zz)-8	Uncharacterized protein. (2337 aa)
	F6ZE60_CIOIN	ANAPC4 domain-containing protein. (494 aa)
	LOC100185717	Uncharacterized protein. (623 aa)
	F6RJS7_CIOIN	Uncharacterized protein. (394 aa)
	LOC100175879	CULLIN_2 domain-containing protein; Belongs to the cullin family. (614 aa)
	LOC100181702	RING-box protein 2. (100 aa)
	F6Z465_CIOIN	Uncharacterized protein. (336 aa)
	LOC100181511	S-phase kinase-associated protein 1; Belongs to the SKP1 family. (162 aa)
	LOC100181334	NEDD8-conjugating enzyme UBE2F-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (186 aa)
	LOC100183130	CULLIN_2 domain-containing protein; Belongs to the cullin family. (744 aa)
	LOC100176571	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family. (198 aa)
	F6QHS0_CIOIN	Uncharacterized protein. (394 aa)
	F6XRF6_CIOIN	BTB domain-containing protein. (634 aa)
	F6YDP2_CIOIN	Uncharacterized protein. (445 aa)
	LOC100177184	Ubiquitin-conjugating enzyme E2 W-like. (152 aa)
	F6ZYD9_CIOIN	BTB domain-containing protein. (626 aa)
	F6R472_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (707 aa)
	F6PKZ6_CIOIN	CULLIN_2 domain-containing protein; Belongs to the cullin family. (363 aa)
	LOC100175171	RING finger and CHY zinc finger domain-containing protein 1. (278 aa)
	LOC100184240	Ubiquitin-conjugating enzyme E2 35-like isoform X2; Belongs to the ubiquitin-conjugating enzyme family. (158 aa)
	F6UAV6_CIOIN	Uncharacterized protein. (282 aa)
	F7AXW2_CIOIN	Uncharacterized protein. (263 aa)
	LOC100183458	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	LOC100185831	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	LOC100175624	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	F7A8M5_CIOIN	HECT domain-containing protein. (1083 aa)
	LOC100186965	Ubiquitin-conjugating enzyme E2 L3-like isoform X1; Belongs to the ubiquitin-conjugating enzyme family. (152 aa)
	LOC100185384	ubiquitin-60S ribosomal protein L40. (128 aa)
	F6RGX1_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein. (181 aa)
	r27a	R27a protein isoform X1. (155 aa)
	LOC100183602	E2_bind domain-containing protein. (446 aa)
	zf(ring)-30	Zinc finger protein. (645 aa)
	F7B1X4_CIOIN	WD_REPEATS_REGION domain-containing protein. (523 aa)
	F6RKQ2_CIOIN	Uncharacterized protein. (437 aa)
	F6Y050_CIOIN	BTB domain-containing protein. (602 aa)
	LOC100185453	Ubiquitin-conjugating enzyme E2 E1; Belongs to the ubiquitin-conjugating enzyme family. (251 aa)
	F6YTZ8_CIOIN	BTB domain-containing protein. (524 aa)
	LOC100182501	TPR_REGION domain-containing protein. (560 aa)
	F7ANR5_CIOIN	CPSF_A domain-containing protein. (1145 aa)
	F6XWG9_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (165 aa)
	LOC100177347	NEDD8-conjugating enzyme Ubc12-like; Belongs to the ubiquitin-conjugating enzyme family. (183 aa)
	F6ZJN8_CIOIN	Uncharacterized protein. (381 aa)
	LOC100176093	Ubiquitin-conjugating enzyme E2 J1-like. (306 aa)
	LOC100176463	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family. (1036 aa)
	F6WRI9_CIOIN	HECT domain-containing protein. (533 aa)
	F6W446_CIOIN	E3 ubiquitin-protein ligase. (752 aa)
	LOC100177208	S-phase kinase-associated protein 2. (453 aa)
	LOC100175542	RING-type E3 ubiquitin-protein ligase PPIL2. (513 aa)
	LOC100177981	Ubiquitin-conjugating enzyme E2 R2-like; Belongs to the ubiquitin-conjugating enzyme family. (230 aa)
	LOC100177101	BTB domain-containing protein. (580 aa)
	LOC100183439	Ubiquitin-conjugating enzyme E2 Q2. (365 aa)
	LOC100182334	Ubiquitin-conjugating enzyme E2 G1; Belongs to the ubiquitin-conjugating enzyme family. (167 aa)
	F6PKV2_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein. (144 aa)
	F6RCH7_CIOIN	Uncharacterized protein. (278 aa)
	LOC100176838	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (202 aa)
	ckn1	Cockayne syndrome 1 homolog. (403 aa)
	betaTrCP	Beta-transducin repeat-containing HOMOLOGUE protein. (621 aa)
	LOC100180099	Ubiquitin-conjugating enzyme E2 S; Belongs to the ubiquitin-conjugating enzyme family. (214 aa)
	F6R5K2_CIOIN	Uncharacterized protein. (316 aa)
	Zf(ring)-22	RING-type domain-containing protein. (262 aa)
	F6XI02_CIOIN	U-box domain-containing protein. (259 aa)
	F6XGY9_CIOIN	Uncharacterized protein. (373 aa)
	pias	Uncharacterized protein. (687 aa)
	F7ABN7_CIOIN	F-box domain-containing protein. (241 aa)
	F6S5U6_CIOIN	BACK domain-containing protein. (222 aa)
	F7A9C9_CIOIN	Uncharacterized protein. (337 aa)
	F7A9B1_CIOIN	Uncharacterized protein. (204 aa)
	LOC100177815	elongin-C-like; Belongs to the SKP1 family. (114 aa)
	F6ZAH0_CIOIN	Uncharacterized protein. (382 aa)
	F6Z8N3_CIOIN	ThiF domain-containing protein. (334 aa)
	Q1RPY5_CIOIN	Zinc finger protein. (579 aa)
	H2XM91_CIOIN	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family. (627 aa)
	LOC100182516	RING-box protein 1. (104 aa)
	H2XP52_CIOIN	UBIQUITIN_CONJUGAT_2 domain-containing protein. (210 aa)
	H2XPF8_CIOIN	Uncharacterized protein. (180 aa)
	LOC100175761	Probable E3 ubiquitin-protein ligase HERC4. (1029 aa)
	H2XPP6_CIOIN	Uncharacterized protein. (121 aa)
	H2XRA7_CIOIN	WD_REPEATS_REGION domain-containing protein. (155 aa)
	LOC100175224	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family. (156 aa)
	LOC100182606	Uncharacterized protein. (568 aa)
	H2XTR5_CIOIN	Uncharacterized protein. (258 aa)
	H2XV00_CIOIN	BTB domain-containing protein. (594 aa)
	H2XYD2_CIOIN	Uncharacterized protein. (208 aa)
	LOC100176189	E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. (285 aa)
	LOC100175446	Uncharacterized protein. (366 aa)
	LOC104266887	Ubiquitin-conjugating enzyme E2 D3-like; Belongs to the ubiquitin-conjugating enzyme family. (149 aa)
	LOC100176662	U-box domain-containing protein. (888 aa)
	H2Y3S8_CIOIN	Uncharacterized protein. (455 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6PKV2_CIOIN	F6RCH7_CIOIN	ENSCINP00000018235	ENSCINP00000018308	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.444
F6PKV2_CIOIN	F6RGX1_CIOIN	ENSCINP00000018235	ENSCINP00000011978	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.643
F6PKV2_CIOIN	F6WRI9_CIOIN	ENSCINP00000018235	ENSCINP00000016316	UBIQUITIN_CONJUGAT_2 domain-containing protein.	HECT domain-containing protein.	0.631
F6PKV2_CIOIN	F6XGY9_CIOIN	ENSCINP00000018235	ENSCINP00000021930	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.850
F6PKV2_CIOIN	F6XWG9_CIOIN	ENSCINP00000018235	ENSCINP00000015354	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.614
F6PKV2_CIOIN	F6ZE60_CIOIN	ENSCINP00000018235	ENSCINP00000000838	UBIQUITIN_CONJUGAT_2 domain-containing protein.	ANAPC4 domain-containing protein.	0.976
F6PKV2_CIOIN	F6ZJN8_CIOIN	ENSCINP00000018235	ENSCINP00000015598	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.725
F6PKV2_CIOIN	F7A9C9_CIOIN	ENSCINP00000018235	ENSCINP00000023645	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.447
F6PKV2_CIOIN	F7B1X4_CIOIN	ENSCINP00000018235	ENSCINP00000012774	UBIQUITIN_CONJUGAT_2 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.990
F6PKV2_CIOIN	H2XM91_CIOIN	ENSCINP00000018235	ENSCINP00000030774	UBIQUITIN_CONJUGAT_2 domain-containing protein.	SUMO-activating enzyme subunit; Belongs to the ubiquitin-activating E1 family.	0.522
F6PKV2_CIOIN	H2XP52_CIOIN	ENSCINP00000018235	ENSCINP00000031435	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.497
F6PKV2_CIOIN	LOC100175224	ENSCINP00000018235	ENSCINP00000032379	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 A; Belongs to the ubiquitin-conjugating enzyme family.	0.590
F6PKV2_CIOIN	LOC100175624	ENSCINP00000018235	ENSCINP00000007971	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2-17 kDa; Belongs to the ubiquitin-conjugating enzyme family.	0.502
F6PKV2_CIOIN	LOC100176093	ENSCINP00000018235	ENSCINP00000015709	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 J1-like.	0.565
F6PKV2_CIOIN	LOC100176463	ENSCINP00000018235	ENSCINP00000016116	UBIQUITIN_CONJUGAT_2 domain-containing protein.	UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.	0.945
F6PKV2_CIOIN	LOC100176571	ENSCINP00000018235	ENSCINP00000004770	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the ubiquitin-conjugating enzyme family.	0.681
F6PKV2_CIOIN	LOC100176838	ENSCINP00000018235	ENSCINP00000018593	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.947
F6PKV2_CIOIN	LOC100177208	ENSCINP00000018235	ENSCINP00000016594	UBIQUITIN_CONJUGAT_2 domain-containing protein.	S-phase kinase-associated protein 2.	0.872
F6PKV2_CIOIN	LOC100177347	ENSCINP00000018235	ENSCINP00000015490	UBIQUITIN_CONJUGAT_2 domain-containing protein.	NEDD8-conjugating enzyme Ubc12-like; Belongs to the ubiquitin-conjugating enzyme family.	0.485
F6PKV2_CIOIN	LOC100177981	ENSCINP00000018235	ENSCINP00000016841	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme E2 R2-like; Belongs to the ubiquitin-conjugating enzyme family.	0.497