(23 nodes) SNARE interactions in vesicular transport network (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC100181871	t-SNARE coiled-coil homology domain-containing protein. (310 aa)
	LOC100181148	Syntaxin-17-like. (363 aa)
	LOC100179814	Syntaxin-18. (291 aa)
	LOC100176507	Synaptobrevin homolog YKT6-like isoform X2; Belongs to the synaptobrevin family. (200 aa)
	F6SNI9_CIOIN	Uncharacterized protein. (252 aa)
	F6Y321_CIOIN	t-SNARE coiled-coil homology domain-containing protein. (236 aa)
	LOC100182843	Uncharacterized protein. (104 aa)
	F7A7X6_CIOIN	V-SNARE coiled-coil homology domain-containing protein. (118 aa)
	LOC100184004	Vesicle transport through interaction with t-SNAREs homolog 1B isoform X1. (225 aa)
	F7AP11_CIOIN	Uncharacterized protein. (259 aa)
	LOC100185029	Uncharacterized protein. (245 aa)
	LOC100184992	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (214 aa)
	F6VLD0_CIOIN	Uncharacterized protein; Belongs to the synaptobrevin family. (221 aa)
	F6Z6E4_CIOIN	V-SNARE domain-containing protein. (176 aa)
	H2XK75_CIOIN	Uncharacterized protein. (497 aa)
	H2XNY0_CIOIN	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (312 aa)
	H2XQZ1_CIOIN	Uncharacterized protein. (135 aa)
	LOC100177611	Vesicle-associated membrane protein 4-like. (126 aa)
	H2XU17_CIOIN	Longin domain-containing protein. (62 aa)
	H2XUP2_CIOIN	V-SNARE coiled-coil homology domain-containing protein. (84 aa)
	LOC100186647	BET1-like protein isoform X2. (111 aa)
	H2Y0C8_CIOIN	Syntaxin-6_N domain-containing protein. (155 aa)
	LOC100181776	BET1 homolog. (102 aa)

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6SNI9_CIOIN	F6VLD0_CIOIN	ENSCINP00000010096	ENSCINP00000026583	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.970
F6SNI9_CIOIN	F6Y321_CIOIN	ENSCINP00000010096	ENSCINP00000011472	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.900
F6SNI9_CIOIN	F6Z6E4_CIOIN	ENSCINP00000010096	ENSCINP00000028512	Uncharacterized protein.	V-SNARE domain-containing protein.	0.851
F6SNI9_CIOIN	F7A7X6_CIOIN	ENSCINP00000010096	ENSCINP00000013777	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.878
F6SNI9_CIOIN	F7AP11_CIOIN	ENSCINP00000010096	ENSCINP00000015282	Uncharacterized protein.	Uncharacterized protein.	0.702
F6SNI9_CIOIN	H2XNY0_CIOIN	ENSCINP00000010096	ENSCINP00000031363	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.862
F6SNI9_CIOIN	H2XQZ1_CIOIN	ENSCINP00000010096	ENSCINP00000032075	Uncharacterized protein.	Uncharacterized protein.	0.711
F6SNI9_CIOIN	H2XU17_CIOIN	ENSCINP00000010096	ENSCINP00000033151	Uncharacterized protein.	Longin domain-containing protein.	0.863
F6SNI9_CIOIN	H2XUP2_CIOIN	ENSCINP00000010096	ENSCINP00000033376	Uncharacterized protein.	V-SNARE coiled-coil homology domain-containing protein.	0.978
F6SNI9_CIOIN	H2Y0C8_CIOIN	ENSCINP00000010096	ENSCINP00000035362	Uncharacterized protein.	Syntaxin-6_N domain-containing protein.	0.948
F6SNI9_CIOIN	LOC100176507	ENSCINP00000010096	ENSCINP00000010030	Uncharacterized protein.	Synaptobrevin homolog YKT6-like isoform X2; Belongs to the synaptobrevin family.	0.682
F6SNI9_CIOIN	LOC100177611	ENSCINP00000010096	ENSCINP00000033000	Uncharacterized protein.	Vesicle-associated membrane protein 4-like.	0.877
F6SNI9_CIOIN	LOC100179814	ENSCINP00000010096	ENSCINP00000009317	Uncharacterized protein.	Syntaxin-18.	0.775
F6SNI9_CIOIN	LOC100181148	ENSCINP00000010096	ENSCINP00000007118	Uncharacterized protein.	Syntaxin-17-like.	0.998
F6SNI9_CIOIN	LOC100181776	ENSCINP00000010096	ENSCINP00000036386	Uncharacterized protein.	BET1 homolog.	0.674
F6SNI9_CIOIN	LOC100181871	ENSCINP00000010096	ENSCINP00000005346	Uncharacterized protein.	t-SNARE coiled-coil homology domain-containing protein.	0.873
F6SNI9_CIOIN	LOC100182843	ENSCINP00000010096	ENSCINP00000013721	Uncharacterized protein.	Uncharacterized protein.	0.774
F6SNI9_CIOIN	LOC100184004	ENSCINP00000010096	ENSCINP00000014685	Uncharacterized protein.	Vesicle transport through interaction with t-SNAREs homolog 1B isoform X1.	0.716
F6SNI9_CIOIN	LOC100184992	ENSCINP00000010096	ENSCINP00000019516	Uncharacterized protein.	Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.728
F6SNI9_CIOIN	LOC100185029	ENSCINP00000010096	ENSCINP00000018445	Uncharacterized protein.	Uncharacterized protein.	0.586