(23 nodes) HDR through Single Strand Annealing (SSA) network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XV97_BRAFL	Uncharacterized protein. (278 aa)
	C3XVP9_BRAFL	Uncharacterized protein. (312 aa)
	C3XXK6_BRAFL	AAA domain-containing protein. (356 aa)
	C3Y254_BRAFL	PWWP domain-containing protein. (437 aa)
	C3Y4F4_BRAFL	Uncharacterized protein. (676 aa)
	C3Y7Z7_BRAFL	Checkpoint protein; Belongs to the HUS1 family. (280 aa)
	C3YBF4_BRAFL	Uncharacterized protein. (2359 aa)
	C3YDF6_BRAFL	ANK_REP_REGION domain-containing protein. (91 aa)
	C3YDK8_BRAFL	AAA domain-containing protein. (362 aa)
	C3YFG1_BRAFL	FHA domain-containing protein. (721 aa)
	C3YH71_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (553 aa)
	C3YH73_BRAFL	FAT domain-containing protein. (2357 aa)
	C3YVC5_BRAFL	Uncharacterized protein. (1003 aa)
	C3YW39_BRAFL	Uncharacterized protein. (2614 aa)
	C3YWA5_BRAFL	AAA_23 domain-containing protein. (187 aa)
	C3Z607_BRAFL	DEAD domain-containing protein. (290 aa)
	C3Z899_BRAFL	AAA domain-containing protein. (364 aa)
	C3Z9X0_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2531 aa)
	C3ZEN4_BRAFL	Mre11_DNA_bind domain-containing protein. (441 aa)
	C3ZI04_BRAFL	Uncharacterized protein. (577 aa)
	C3ZL26_BRAFL	AAA domain-containing protein. (329 aa)
	C3ZMX5_BRAFL	Uncharacterized protein. (1057 aa)
	C3ZV28_BRAFL	Uncharacterized protein. (383 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XV97_BRAFL	C3XVP9_BRAFL	C3XV97	C3XVP9	Uncharacterized protein.	Uncharacterized protein.	0.999
C3XV97_BRAFL	C3XXK6_BRAFL	C3XV97	C3XXK6	Uncharacterized protein.	AAA domain-containing protein.	0.961
C3XV97_BRAFL	C3Y254_BRAFL	C3XV97	C3Y254	Uncharacterized protein.	PWWP domain-containing protein.	0.972
C3XV97_BRAFL	C3Y4F4_BRAFL	C3XV97	C3Y4F4	Uncharacterized protein.	Uncharacterized protein.	0.722
C3XV97_BRAFL	C3Y7Z7_BRAFL	C3XV97	C3Y7Z7	Uncharacterized protein.	Checkpoint protein; Belongs to the HUS1 family.	0.999
C3XV97_BRAFL	C3YBF4_BRAFL	C3XV97	C3YBF4	Uncharacterized protein.	Uncharacterized protein.	0.838
C3XV97_BRAFL	C3YDF6_BRAFL	C3XV97	C3YDF6	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.860
C3XV97_BRAFL	C3YDK8_BRAFL	C3XV97	C3YDK8	Uncharacterized protein.	AAA domain-containing protein.	0.965
C3XV97_BRAFL	C3YFG1_BRAFL	C3XV97	C3YFG1	Uncharacterized protein.	FHA domain-containing protein.	0.707
C3XV97_BRAFL	C3YH71_BRAFL	C3XV97	C3YH71	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.805
C3XV97_BRAFL	C3YH73_BRAFL	C3XV97	C3YH73	Uncharacterized protein.	FAT domain-containing protein.	0.805
C3XV97_BRAFL	C3YVC5_BRAFL	C3XV97	C3YVC5	Uncharacterized protein.	Uncharacterized protein.	0.698
C3XV97_BRAFL	C3YW39_BRAFL	C3XV97	C3YW39	Uncharacterized protein.	Uncharacterized protein.	0.594
C3XV97_BRAFL	C3Z607_BRAFL	C3XV97	C3Z607	Uncharacterized protein.	DEAD domain-containing protein.	0.964
C3XV97_BRAFL	C3Z899_BRAFL	C3XV97	C3Z899	Uncharacterized protein.	AAA domain-containing protein.	0.982
C3XV97_BRAFL	C3Z9X0_BRAFL	C3XV97	C3Z9X0	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.915
C3XV97_BRAFL	C3ZEN4_BRAFL	C3XV97	C3ZEN4	Uncharacterized protein.	Mre11_DNA_bind domain-containing protein.	0.751
C3XV97_BRAFL	C3ZI04_BRAFL	C3XV97	C3ZI04	Uncharacterized protein.	Uncharacterized protein.	0.987
C3XV97_BRAFL	C3ZL26_BRAFL	C3XV97	C3ZL26	Uncharacterized protein.	AAA domain-containing protein.	0.968
C3XV97_BRAFL	C3ZMX5_BRAFL	C3XV97	C3ZMX5	Uncharacterized protein.	Uncharacterized protein.	0.639