(5 nodes) Choline catabolic process, and L-lysine catabolic process to acetyl-CoA via L-pipecolate network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XVP5_BRAFL	DAO domain-containing protein. (387 aa)
	C3Y1M9_BRAFL	Uncharacterized protein. (828 aa)
	C3Y1N0_BRAFL	Uncharacterized protein. (774 aa)
	C3YB94_BRAFL	Methyltranfer_dom domain-containing protein. (219 aa)
	C3YDB6_BRAFL	DAO domain-containing protein. (234 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVP5_BRAFL	C3Y1M9_BRAFL	C3XVP5	C3Y1M9	DAO domain-containing protein.	Uncharacterized protein.	0.941
C3XVP5_BRAFL	C3Y1N0_BRAFL	C3XVP5	C3Y1N0	DAO domain-containing protein.	Uncharacterized protein.	0.941
C3XVP5_BRAFL	C3YB94_BRAFL	C3XVP5	C3YB94	DAO domain-containing protein.	Methyltranfer_dom domain-containing protein.	0.912
C3XVP5_BRAFL	C3YDB6_BRAFL	C3XVP5	C3YDB6	DAO domain-containing protein.	DAO domain-containing protein.	0.902
C3Y1M9_BRAFL	C3XVP5_BRAFL	C3Y1M9	C3XVP5	Uncharacterized protein.	DAO domain-containing protein.	0.941
C3Y1M9_BRAFL	C3Y1N0_BRAFL	C3Y1M9	C3Y1N0	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y1M9_BRAFL	C3YB94_BRAFL	C3Y1M9	C3YB94	Uncharacterized protein.	Methyltranfer_dom domain-containing protein.	0.919
C3Y1M9_BRAFL	C3YDB6_BRAFL	C3Y1M9	C3YDB6	Uncharacterized protein.	DAO domain-containing protein.	0.941
C3Y1N0_BRAFL	C3XVP5_BRAFL	C3Y1N0	C3XVP5	Uncharacterized protein.	DAO domain-containing protein.	0.941
C3Y1N0_BRAFL	C3Y1M9_BRAFL	C3Y1N0	C3Y1M9	Uncharacterized protein.	Uncharacterized protein.	0.900
C3Y1N0_BRAFL	C3YB94_BRAFL	C3Y1N0	C3YB94	Uncharacterized protein.	Methyltranfer_dom domain-containing protein.	0.919
C3Y1N0_BRAFL	C3YDB6_BRAFL	C3Y1N0	C3YDB6	Uncharacterized protein.	DAO domain-containing protein.	0.941
C3YB94_BRAFL	C3XVP5_BRAFL	C3YB94	C3XVP5	Methyltranfer_dom domain-containing protein.	DAO domain-containing protein.	0.912
C3YB94_BRAFL	C3Y1M9_BRAFL	C3YB94	C3Y1M9	Methyltranfer_dom domain-containing protein.	Uncharacterized protein.	0.919
C3YB94_BRAFL	C3Y1N0_BRAFL	C3YB94	C3Y1N0	Methyltranfer_dom domain-containing protein.	Uncharacterized protein.	0.919
C3YB94_BRAFL	C3YDB6_BRAFL	C3YB94	C3YDB6	Methyltranfer_dom domain-containing protein.	DAO domain-containing protein.	0.912
C3YDB6_BRAFL	C3XVP5_BRAFL	C3YDB6	C3XVP5	DAO domain-containing protein.	DAO domain-containing protein.	0.902
C3YDB6_BRAFL	C3Y1M9_BRAFL	C3YDB6	C3Y1M9	DAO domain-containing protein.	Uncharacterized protein.	0.941
C3YDB6_BRAFL	C3Y1N0_BRAFL	C3YDB6	C3Y1N0	DAO domain-containing protein.	Uncharacterized protein.	0.941
C3YDB6_BRAFL	C3YB94_BRAFL	C3YDB6	C3YB94	DAO domain-containing protein.	Methyltranfer_dom domain-containing protein.	0.912