(5 nodes) ROK family, and Trachea morphogenesis network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRC7_BRAFL	Epimerase_2 domain-containing protein. (736 aa)
	C3Y4T4_BRAFL	SAM domain-containing protein. (312 aa)
	C3YL08_BRAFL	Uncharacterized protein. (1727 aa)
	C3YPU9_BRAFL	Uncharacterized protein. (179 aa)
	C3ZTK3_BRAFL	Epimerase_2 domain-containing protein. (727 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRC7_BRAFL	C3Y4T4_BRAFL	C3XRC7	C3Y4T4	Epimerase_2 domain-containing protein.	SAM domain-containing protein.	0.906
C3XRC7_BRAFL	C3YL08_BRAFL	C3XRC7	C3YL08	Epimerase_2 domain-containing protein.	Uncharacterized protein.	0.900
C3XRC7_BRAFL	C3YPU9_BRAFL	C3XRC7	C3YPU9	Epimerase_2 domain-containing protein.	Uncharacterized protein.	0.906
C3XRC7_BRAFL	C3ZTK3_BRAFL	C3XRC7	C3ZTK3	Epimerase_2 domain-containing protein.	Epimerase_2 domain-containing protein.	0.900
C3Y4T4_BRAFL	C3XRC7_BRAFL	C3Y4T4	C3XRC7	SAM domain-containing protein.	Epimerase_2 domain-containing protein.	0.906
C3Y4T4_BRAFL	C3YL08_BRAFL	C3Y4T4	C3YL08	SAM domain-containing protein.	Uncharacterized protein.	0.900
C3Y4T4_BRAFL	C3YPU9_BRAFL	C3Y4T4	C3YPU9	SAM domain-containing protein.	Uncharacterized protein.	0.912
C3Y4T4_BRAFL	C3ZTK3_BRAFL	C3Y4T4	C3ZTK3	SAM domain-containing protein.	Epimerase_2 domain-containing protein.	0.906
C3YL08_BRAFL	C3XRC7_BRAFL	C3YL08	C3XRC7	Uncharacterized protein.	Epimerase_2 domain-containing protein.	0.900
C3YL08_BRAFL	C3Y4T4_BRAFL	C3YL08	C3Y4T4	Uncharacterized protein.	SAM domain-containing protein.	0.900
C3YL08_BRAFL	C3YPU9_BRAFL	C3YL08	C3YPU9	Uncharacterized protein.	Uncharacterized protein.	0.908
C3YL08_BRAFL	C3ZTK3_BRAFL	C3YL08	C3ZTK3	Uncharacterized protein.	Epimerase_2 domain-containing protein.	0.900
C3YPU9_BRAFL	C3XRC7_BRAFL	C3YPU9	C3XRC7	Uncharacterized protein.	Epimerase_2 domain-containing protein.	0.906
C3YPU9_BRAFL	C3Y4T4_BRAFL	C3YPU9	C3Y4T4	Uncharacterized protein.	SAM domain-containing protein.	0.912
C3YPU9_BRAFL	C3YL08_BRAFL	C3YPU9	C3YL08	Uncharacterized protein.	Uncharacterized protein.	0.908
C3YPU9_BRAFL	C3ZTK3_BRAFL	C3YPU9	C3ZTK3	Uncharacterized protein.	Epimerase_2 domain-containing protein.	0.906
C3ZTK3_BRAFL	C3XRC7_BRAFL	C3ZTK3	C3XRC7	Epimerase_2 domain-containing protein.	Epimerase_2 domain-containing protein.	0.900
C3ZTK3_BRAFL	C3Y4T4_BRAFL	C3ZTK3	C3Y4T4	Epimerase_2 domain-containing protein.	SAM domain-containing protein.	0.906
C3ZTK3_BRAFL	C3YL08_BRAFL	C3ZTK3	C3YL08	Epimerase_2 domain-containing protein.	Uncharacterized protein.	0.900
C3ZTK3_BRAFL	C3YPU9_BRAFL	C3ZTK3	C3YPU9	Epimerase_2 domain-containing protein.	Uncharacterized protein.	0.906