8 items (Branchiostoma floridae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQZ2_BRAFL	Uncharacterized protein. (186 aa)
	C3Y782_BRAFL	Uncharacterized protein. (120 aa)
	C3YZI1_BRAFL	Aminotran_1_2 domain-containing protein. (214 aa)
	C3Z2T2_BRAFL	YrdC-like domain-containing protein. (382 aa)
	C3Z2T8_BRAFL	YrdC-like domain-containing protein. (372 aa)
	C3ZCP5_BRAFL	Uncharacterized protein. (373 aa)
	C3ZEH0_BRAFL	Uncharacterized protein. (652 aa)
	C3ZNQ7_BRAFL	YrdC-like domain-containing protein. (160 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQZ2_BRAFL	C3Z2T2_BRAFL	C3XQZ2	C3Z2T2	Uncharacterized protein.	YrdC-like domain-containing protein.	0.533
C3XQZ2_BRAFL	C3Z2T8_BRAFL	C3XQZ2	C3Z2T8	Uncharacterized protein.	YrdC-like domain-containing protein.	0.533
C3XQZ2_BRAFL	C3ZNQ7_BRAFL	C3XQZ2	C3ZNQ7	Uncharacterized protein.	YrdC-like domain-containing protein.	0.533
C3YZI1_BRAFL	C3ZCP5_BRAFL	C3YZI1	C3ZCP5	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.484
C3YZI1_BRAFL	C3ZEH0_BRAFL	C3YZI1	C3ZEH0	Aminotran_1_2 domain-containing protein.	Uncharacterized protein.	0.790
C3Z2T2_BRAFL	C3XQZ2_BRAFL	C3Z2T2	C3XQZ2	YrdC-like domain-containing protein.	Uncharacterized protein.	0.533
C3Z2T2_BRAFL	C3ZEH0_BRAFL	C3Z2T2	C3ZEH0	YrdC-like domain-containing protein.	Uncharacterized protein.	0.697
C3Z2T8_BRAFL	C3XQZ2_BRAFL	C3Z2T8	C3XQZ2	YrdC-like domain-containing protein.	Uncharacterized protein.	0.533
C3Z2T8_BRAFL	C3ZEH0_BRAFL	C3Z2T8	C3ZEH0	YrdC-like domain-containing protein.	Uncharacterized protein.	0.697
C3ZCP5_BRAFL	C3YZI1_BRAFL	C3ZCP5	C3YZI1	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.484
C3ZCP5_BRAFL	C3ZEH0_BRAFL	C3ZCP5	C3ZEH0	Uncharacterized protein.	Uncharacterized protein.	0.790
C3ZEH0_BRAFL	C3YZI1_BRAFL	C3ZEH0	C3YZI1	Uncharacterized protein.	Aminotran_1_2 domain-containing protein.	0.790
C3ZEH0_BRAFL	C3Z2T2_BRAFL	C3ZEH0	C3Z2T2	Uncharacterized protein.	YrdC-like domain-containing protein.	0.697
C3ZEH0_BRAFL	C3Z2T8_BRAFL	C3ZEH0	C3Z2T8	Uncharacterized protein.	YrdC-like domain-containing protein.	0.697
C3ZEH0_BRAFL	C3ZCP5_BRAFL	C3ZEH0	C3ZCP5	Uncharacterized protein.	Uncharacterized protein.	0.790
C3ZEH0_BRAFL	C3ZNQ7_BRAFL	C3ZEH0	C3ZNQ7	Uncharacterized protein.	YrdC-like domain-containing protein.	0.697
C3ZNQ7_BRAFL	C3XQZ2_BRAFL	C3ZNQ7	C3XQZ2	YrdC-like domain-containing protein.	Uncharacterized protein.	0.533
C3ZNQ7_BRAFL	C3ZEH0_BRAFL	C3ZNQ7	C3ZEH0	YrdC-like domain-containing protein.	Uncharacterized protein.	0.697