(11 nodes) ERCC4 domain, and T-circle formation network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRP0_BRAFL	Uncharacterized protein. (2342 aa)
	C3Y0V4_BRAFL	ERCC4 domain-containing protein. (268 aa)
	C3Y0V8_BRAFL	ERCC4 domain-containing protein. (600 aa)
	C3Y0V9_BRAFL	Uncharacterized protein. (343 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3YQX9_BRAFL	XPA_C domain-containing protein. (259 aa)
	C3Z419_BRAFL	GIY-YIG domain-containing protein. (155 aa)
	C3Z6W7_BRAFL	ERCC4 domain-containing protein. (598 aa)
	C3ZNW9_BRAFL	ERCC4 domain-containing protein. (515 aa)
	C3ZNX8_BRAFL	Uncharacterized protein. (233 aa)
	C4A088_BRAFL	BTB domain-containing protein. (2428 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRP0_BRAFL	C3Y0V4_BRAFL	C3XRP0	C3Y0V4	Uncharacterized protein.	ERCC4 domain-containing protein.	0.964
C3XRP0_BRAFL	C3Y0V8_BRAFL	C3XRP0	C3Y0V8	Uncharacterized protein.	ERCC4 domain-containing protein.	0.964
C3XRP0_BRAFL	C3Y0V9_BRAFL	C3XRP0	C3Y0V9	Uncharacterized protein.	Uncharacterized protein.	0.964
C3XRP0_BRAFL	C3Y937_BRAFL	C3XRP0	C3Y937	Uncharacterized protein.	Uncharacterized protein.	0.999
C3XRP0_BRAFL	C3YQX9_BRAFL	C3XRP0	C3YQX9	Uncharacterized protein.	XPA_C domain-containing protein.	0.982
C3XRP0_BRAFL	C3Z419_BRAFL	C3XRP0	C3Z419	Uncharacterized protein.	GIY-YIG domain-containing protein.	0.923
C3XRP0_BRAFL	C3Z6W7_BRAFL	C3XRP0	C3Z6W7	Uncharacterized protein.	ERCC4 domain-containing protein.	0.558
C3XRP0_BRAFL	C3ZNW9_BRAFL	C3XRP0	C3ZNW9	Uncharacterized protein.	ERCC4 domain-containing protein.	0.572
C3XRP0_BRAFL	C3ZNX8_BRAFL	C3XRP0	C3ZNX8	Uncharacterized protein.	Uncharacterized protein.	0.572
C3XRP0_BRAFL	C4A088_BRAFL	C3XRP0	C4A088	Uncharacterized protein.	BTB domain-containing protein.	0.878
C3Y0V4_BRAFL	C3XRP0_BRAFL	C3Y0V4	C3XRP0	ERCC4 domain-containing protein.	Uncharacterized protein.	0.964
C3Y0V4_BRAFL	C3Y0V8_BRAFL	C3Y0V4	C3Y0V8	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.557
C3Y0V4_BRAFL	C3Y0V9_BRAFL	C3Y0V4	C3Y0V9	ERCC4 domain-containing protein.	Uncharacterized protein.	0.763
C3Y0V4_BRAFL	C3Y937_BRAFL	C3Y0V4	C3Y937	ERCC4 domain-containing protein.	Uncharacterized protein.	0.819
C3Y0V4_BRAFL	C3YQX9_BRAFL	C3Y0V4	C3YQX9	ERCC4 domain-containing protein.	XPA_C domain-containing protein.	0.710
C3Y0V4_BRAFL	C3Z419_BRAFL	C3Y0V4	C3Z419	ERCC4 domain-containing protein.	GIY-YIG domain-containing protein.	0.625
C3Y0V4_BRAFL	C3Z6W7_BRAFL	C3Y0V4	C3Z6W7	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.977
C3Y0V4_BRAFL	C3ZNW9_BRAFL	C3Y0V4	C3ZNW9	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.638
C3Y0V4_BRAFL	C3ZNX8_BRAFL	C3Y0V4	C3ZNX8	ERCC4 domain-containing protein.	Uncharacterized protein.	0.638
C3Y0V4_BRAFL	C4A088_BRAFL	C3Y0V4	C4A088	ERCC4 domain-containing protein.	BTB domain-containing protein.	0.924