(10 nodes) Replication fork processing, and RQC domain network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y124_BRAFL	Uncharacterized protein. (849 aa)
	C3YGG0_BRAFL	Uncharacterized protein. (1356 aa)
	C3YHN8_BRAFL	Uncharacterized protein. (831 aa)
	C3YHR6_BRAFL	Uncharacterized protein. (764 aa)
	C3YZS6_BRAFL	Uncharacterized protein. (425 aa)
	C3Z291_BRAFL	RING-type domain-containing protein. (668 aa)
	C3Z695_BRAFL	MMS22L_N domain-containing protein. (239 aa)
	C3ZHE2_BRAFL	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily. (563 aa)
	C3ZLB0_BRAFL	Uncharacterized protein. (477 aa)
	C4A095_BRAFL	Uncharacterized protein. (459 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y124_BRAFL	C3ZHE2_BRAFL	C3Y124	C3ZHE2	Uncharacterized protein.	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.523
C3YGG0_BRAFL	C3Z695_BRAFL	C3YGG0	C3Z695	Uncharacterized protein.	MMS22L_N domain-containing protein.	0.638
C3YGG0_BRAFL	C3ZHE2_BRAFL	C3YGG0	C3ZHE2	Uncharacterized protein.	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.412
C3YGG0_BRAFL	C3ZLB0_BRAFL	C3YGG0	C3ZLB0	Uncharacterized protein.	Uncharacterized protein.	0.638
C3YHN8_BRAFL	C3Z291_BRAFL	C3YHN8	C3Z291	Uncharacterized protein.	RING-type domain-containing protein.	0.862
C3YHN8_BRAFL	C3ZHE2_BRAFL	C3YHN8	C3ZHE2	Uncharacterized protein.	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.912
C3YHR6_BRAFL	C3Z291_BRAFL	C3YHR6	C3Z291	Uncharacterized protein.	RING-type domain-containing protein.	0.862
C3YHR6_BRAFL	C3ZHE2_BRAFL	C3YHR6	C3ZHE2	Uncharacterized protein.	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.912
C3YZS6_BRAFL	C4A095_BRAFL	C3YZS6	C4A095	Uncharacterized protein.	Uncharacterized protein.	0.758
C3Z291_BRAFL	C3YHN8_BRAFL	C3Z291	C3YHN8	RING-type domain-containing protein.	Uncharacterized protein.	0.862
C3Z291_BRAFL	C3YHR6_BRAFL	C3Z291	C3YHR6	RING-type domain-containing protein.	Uncharacterized protein.	0.862
C3Z291_BRAFL	C3ZHE2_BRAFL	C3Z291	C3ZHE2	RING-type domain-containing protein.	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	0.586
C3Z695_BRAFL	C3YGG0_BRAFL	C3Z695	C3YGG0	MMS22L_N domain-containing protein.	Uncharacterized protein.	0.638
C3Z695_BRAFL	C3ZLB0_BRAFL	C3Z695	C3ZLB0	MMS22L_N domain-containing protein.	Uncharacterized protein.	0.511
C3ZHE2_BRAFL	C3Y124_BRAFL	C3ZHE2	C3Y124	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	Uncharacterized protein.	0.523
C3ZHE2_BRAFL	C3YGG0_BRAFL	C3ZHE2	C3YGG0	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	Uncharacterized protein.	0.412
C3ZHE2_BRAFL	C3YHN8_BRAFL	C3ZHE2	C3YHN8	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	Uncharacterized protein.	0.912
C3ZHE2_BRAFL	C3YHR6_BRAFL	C3ZHE2	C3YHR6	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	Uncharacterized protein.	0.912
C3ZHE2_BRAFL	C3Z291_BRAFL	C3ZHE2	C3Z291	Uncharacterized protein; Belongs to the SNF2/RAD54 helicase family. SMARCAL1 subfamily.	RING-type domain-containing protein.	0.586
C3ZLB0_BRAFL	C3YGG0_BRAFL	C3ZLB0	C3YGG0	Uncharacterized protein.	Uncharacterized protein.	0.638