(10 nodes) SNARE interactions in vesicular transport, and Syntaxin, N-terminal domain network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y4B1_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (198 aa)
	C3Y4G5_BRAFL	t-SNARE coiled-coil homology domain-containing protein. (109 aa)
	C3YH01_BRAFL	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (331 aa)
	C3YP19_BRAFL	Uso1_p115_head domain-containing protein. (618 aa)
	C3YSG3_BRAFL	Longin domain-containing protein; Belongs to the synaptobrevin family. (296 aa)
	C3YU04_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (226 aa)
	C3Z089_BRAFL	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network. (211 aa)
	C3Z9D6_BRAFL	Uncharacterized protein. (185 aa)
	C3ZCV0_BRAFL	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (253 aa)
	C3ZXF0_BRAFL	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family. (642 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y4B1_BRAFL	C3Y4G5_BRAFL	C3Y4B1	C3Y4G5	Uncharacterized protein; Belongs to the synaptobrevin family.	t-SNARE coiled-coil homology domain-containing protein.	0.997
C3Y4B1_BRAFL	C3YH01_BRAFL	C3Y4B1	C3YH01	Uncharacterized protein; Belongs to the synaptobrevin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.998
C3Y4B1_BRAFL	C3YP19_BRAFL	C3Y4B1	C3YP19	Uncharacterized protein; Belongs to the synaptobrevin family.	Uso1_p115_head domain-containing protein.	0.917
C3Y4B1_BRAFL	C3YSG3_BRAFL	C3Y4B1	C3YSG3	Uncharacterized protein; Belongs to the synaptobrevin family.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.973
C3Y4B1_BRAFL	C3YU04_BRAFL	C3Y4B1	C3YU04	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.986
C3Y4B1_BRAFL	C3Z089_BRAFL	C3Y4B1	C3Z089	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.995
C3Y4B1_BRAFL	C3Z9D6_BRAFL	C3Y4B1	C3Z9D6	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein.	0.998
C3Y4B1_BRAFL	C3ZCV0_BRAFL	C3Y4B1	C3ZCV0	Uncharacterized protein; Belongs to the synaptobrevin family.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.992
C3Y4B1_BRAFL	C3ZXF0_BRAFL	C3Y4B1	C3ZXF0	Uncharacterized protein; Belongs to the synaptobrevin family.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.994
C3Y4G5_BRAFL	C3Y4B1_BRAFL	C3Y4G5	C3Y4B1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.997
C3Y4G5_BRAFL	C3YH01_BRAFL	C3Y4G5	C3YH01	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.999
C3Y4G5_BRAFL	C3YP19_BRAFL	C3Y4G5	C3YP19	t-SNARE coiled-coil homology domain-containing protein.	Uso1_p115_head domain-containing protein.	0.987
C3Y4G5_BRAFL	C3YSG3_BRAFL	C3Y4G5	C3YSG3	t-SNARE coiled-coil homology domain-containing protein.	Longin domain-containing protein; Belongs to the synaptobrevin family.	0.974
C3Y4G5_BRAFL	C3YU04_BRAFL	C3Y4G5	C3YU04	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.998
C3Y4G5_BRAFL	C3Z089_BRAFL	C3Y4G5	C3Z089	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.	0.999
C3Y4G5_BRAFL	C3Z9D6_BRAFL	C3Y4G5	C3Z9D6	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein.	0.999
C3Y4G5_BRAFL	C3ZCV0_BRAFL	C3Y4G5	C3ZCV0	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.960
C3Y4G5_BRAFL	C3ZXF0_BRAFL	C3Y4G5	C3ZXF0	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.	0.998
C3YH01_BRAFL	C3Y4B1_BRAFL	C3YH01	C3Y4B1	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.998
C3YH01_BRAFL	C3Y4G5_BRAFL	C3YH01	C3Y4G5	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.999