(10 nodes) Cohesin Loading onto Chromatin network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XWA0_BRAFL	Uncharacterized protein. (1435 aa)
	C3Y1G8_BRAFL	Uncharacterized protein. (540 aa)
	C3YJJ7_BRAFL	SCD domain-containing protein. (965 aa)
	C3YJL1_BRAFL	SCD domain-containing protein. (987 aa)
	C3YMX6_BRAFL	Rad21_Rec8_N domain-containing protein. (422 aa)
	C3Z465_BRAFL	Uncharacterized protein. (164 aa)
	C3Z9I6_BRAFL	Uncharacterized protein. (643 aa)
	C3ZVX7_BRAFL	Nipped-B protein. (1493 aa)
	C3ZWG8_BRAFL	Uncharacterized protein. (965 aa)
	C3ZXG6_BRAFL	Uncharacterized protein. (226 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XWA0_BRAFL	C3Y1G8_BRAFL	C3XWA0	C3Y1G8	Uncharacterized protein.	Uncharacterized protein.	0.862
C3XWA0_BRAFL	C3YJJ7_BRAFL	C3XWA0	C3YJJ7	Uncharacterized protein.	SCD domain-containing protein.	0.977
C3XWA0_BRAFL	C3YJL1_BRAFL	C3XWA0	C3YJL1	Uncharacterized protein.	SCD domain-containing protein.	0.977
C3XWA0_BRAFL	C3YMX6_BRAFL	C3XWA0	C3YMX6	Uncharacterized protein.	Rad21_Rec8_N domain-containing protein.	0.999
C3XWA0_BRAFL	C3Z465_BRAFL	C3XWA0	C3Z465	Uncharacterized protein.	Uncharacterized protein.	0.993
C3XWA0_BRAFL	C3Z9I6_BRAFL	C3XWA0	C3Z9I6	Uncharacterized protein.	Uncharacterized protein.	0.869
C3XWA0_BRAFL	C3ZVX7_BRAFL	C3XWA0	C3ZVX7	Uncharacterized protein.	Nipped-B protein.	0.969
C3XWA0_BRAFL	C3ZWG8_BRAFL	C3XWA0	C3ZWG8	Uncharacterized protein.	Uncharacterized protein.	0.974
C3XWA0_BRAFL	C3ZXG6_BRAFL	C3XWA0	C3ZXG6	Uncharacterized protein.	Uncharacterized protein.	0.985
C3Y1G8_BRAFL	C3XWA0_BRAFL	C3Y1G8	C3XWA0	Uncharacterized protein.	Uncharacterized protein.	0.862
C3Y1G8_BRAFL	C3YJJ7_BRAFL	C3Y1G8	C3YJJ7	Uncharacterized protein.	SCD domain-containing protein.	0.749
C3Y1G8_BRAFL	C3YJL1_BRAFL	C3Y1G8	C3YJL1	Uncharacterized protein.	SCD domain-containing protein.	0.749
C3Y1G8_BRAFL	C3YMX6_BRAFL	C3Y1G8	C3YMX6	Uncharacterized protein.	Rad21_Rec8_N domain-containing protein.	0.855
C3Y1G8_BRAFL	C3Z465_BRAFL	C3Y1G8	C3Z465	Uncharacterized protein.	Uncharacterized protein.	0.836
C3Y1G8_BRAFL	C3Z9I6_BRAFL	C3Y1G8	C3Z9I6	Uncharacterized protein.	Uncharacterized protein.	0.827
C3Y1G8_BRAFL	C3ZVX7_BRAFL	C3Y1G8	C3ZVX7	Uncharacterized protein.	Nipped-B protein.	0.986
C3Y1G8_BRAFL	C3ZWG8_BRAFL	C3Y1G8	C3ZWG8	Uncharacterized protein.	Uncharacterized protein.	0.768
C3Y1G8_BRAFL	C3ZXG6_BRAFL	C3Y1G8	C3ZXG6	Uncharacterized protein.	Uncharacterized protein.	0.684
C3YJJ7_BRAFL	C3XWA0_BRAFL	C3YJJ7	C3XWA0	SCD domain-containing protein.	Uncharacterized protein.	0.977
C3YJJ7_BRAFL	C3Y1G8_BRAFL	C3YJJ7	C3Y1G8	SCD domain-containing protein.	Uncharacterized protein.	0.749