(28 nodes) Autophagy, and Phosphatidylinositol 3-kinase complex, class III network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XS24_BRAFL	Uncharacterized protein. (2114 aa)
	C3XS77_BRAFL	PB1 domain-containing protein. (340 aa)
	C3XU59_BRAFL	Uncharacterized protein. (120 aa)
	C3XXF8_BRAFL	Uncharacterized protein. (554 aa)
	C3XYM7_BRAFL	Uncharacterized protein. (1314 aa)
	C3Y0C3_BRAFL	Uncharacterized protein. (516 aa)
	C3Y1V6_BRAFL	Phosphatidylinositol 3-kinase catalytic subunit type 3. (890 aa)
	C3Y461_BRAFL	Uncharacterized protein. (218 aa)
	C3Y8L2_BRAFL	Uncharacterized protein. (117 aa)
	C3Y9Z4_BRAFL	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (384 aa)
	C3YEM3_BRAFL	Uncharacterized protein. (481 aa)
	C3YIY4_BRAFL	Uncharacterized protein. (244 aa)
	C3YPG9_BRAFL	DUF4206 domain-containing protein. (202 aa)
	C3YUE8_BRAFL	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (745 aa)
	C3YWN0_BRAFL	Uncharacterized protein. (358 aa)
	C3Z384_BRAFL	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (612 aa)
	C3Z475_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (268 aa)
	C3Z4R9_BRAFL	Uncharacterized protein. (124 aa)
	C3ZDY7_BRAFL	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family. (380 aa)
	C3ZE24_BRAFL	Uncharacterized protein. (303 aa)
	C3ZEM6_BRAFL	Autophagy-related protein 3. (1022 aa)
	C3ZEY1_BRAFL	WD_REPEATS_REGION domain-containing protein. (601 aa)
	C3ZFN7_BRAFL	Autophagy_act_C domain-containing protein. (240 aa)
	C3ZI99_BRAFL	Uncharacterized protein. (117 aa)
	C3ZJI8_BRAFL	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (86 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)
	C3ZWV2_BRAFL	Uncharacterized protein. (1163 aa)
	C3ZYW7_BRAFL	Uncharacterized protein. (1334 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS24_BRAFL	C3XS77_BRAFL	C3XS24	C3XS77	Uncharacterized protein.	PB1 domain-containing protein.	0.729
C3XS24_BRAFL	C3XXF8_BRAFL	C3XS24	C3XXF8	Uncharacterized protein.	Uncharacterized protein.	0.521
C3XS24_BRAFL	C3XYM7_BRAFL	C3XS24	C3XYM7	Uncharacterized protein.	Uncharacterized protein.	0.519
C3XS24_BRAFL	C3Y0C3_BRAFL	C3XS24	C3Y0C3	Uncharacterized protein.	Uncharacterized protein.	0.583
C3XS24_BRAFL	C3Y1V6_BRAFL	C3XS24	C3Y1V6	Uncharacterized protein.	Phosphatidylinositol 3-kinase catalytic subunit type 3.	0.711
C3XS24_BRAFL	C3Y461_BRAFL	C3XS24	C3Y461	Uncharacterized protein.	Uncharacterized protein.	0.710
C3XS24_BRAFL	C3Y8L2_BRAFL	C3XS24	C3Y8L2	Uncharacterized protein.	Uncharacterized protein.	0.525
C3XS24_BRAFL	C3Y9Z4_BRAFL	C3XS24	C3Y9Z4	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.715
C3XS24_BRAFL	C3YEM3_BRAFL	C3XS24	C3YEM3	Uncharacterized protein.	Uncharacterized protein.	0.711
C3XS24_BRAFL	C3YUE8_BRAFL	C3XS24	C3YUE8	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.711
C3XS24_BRAFL	C3YWN0_BRAFL	C3XS24	C3YWN0	Uncharacterized protein.	Uncharacterized protein.	0.996
C3XS24_BRAFL	C3Z384_BRAFL	C3XS24	C3Z384	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.827
C3XS24_BRAFL	C3Z475_BRAFL	C3XS24	C3Z475	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.981
C3XS24_BRAFL	C3ZDY7_BRAFL	C3XS24	C3ZDY7	Uncharacterized protein.	Cysteine protease; Cysteine protease required for the cytoplasm to vacuole transport (Cvt) and autophagy; Belongs to the peptidase C54 family.	0.720
C3XS24_BRAFL	C3ZE24_BRAFL	C3XS24	C3ZE24	Uncharacterized protein.	Uncharacterized protein.	0.549
C3XS24_BRAFL	C3ZEM6_BRAFL	C3XS24	C3ZEM6	Uncharacterized protein.	Autophagy-related protein 3.	0.711
C3XS24_BRAFL	C3ZEY1_BRAFL	C3XS24	C3ZEY1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.711
C3XS24_BRAFL	C3ZFN7_BRAFL	C3XS24	C3ZFN7	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.706
C3XS24_BRAFL	C3ZI99_BRAFL	C3XS24	C3ZI99	Uncharacterized protein.	Uncharacterized protein.	0.525
C3XS24_BRAFL	C3ZJI8_BRAFL	C3XS24	C3ZJI8	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.711