(10 nodes) Autophagy of nucleus network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XS24_BRAFL	Uncharacterized protein. (2114 aa)
	C3YUE8_BRAFL	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy. (745 aa)
	C3YWN0_BRAFL	Uncharacterized protein. (358 aa)
	C3Z384_BRAFL	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family. (612 aa)
	C3Z475_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (268 aa)
	C3ZEM6_BRAFL	Autophagy-related protein 3. (1022 aa)
	C3ZEY1_BRAFL	WD_REPEATS_REGION domain-containing protein. (601 aa)
	C3ZFN7_BRAFL	Autophagy_act_C domain-containing protein. (240 aa)
	C3ZJI8_BRAFL	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (86 aa)
	C3ZNT2_BRAFL	Autophagy protein 5; Involved in autophagic vesicle formation. (261 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS24_BRAFL	C3YUE8_BRAFL	C3XS24	C3YUE8	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.711
C3XS24_BRAFL	C3YWN0_BRAFL	C3XS24	C3YWN0	Uncharacterized protein.	Uncharacterized protein.	0.996
C3XS24_BRAFL	C3Z384_BRAFL	C3XS24	C3Z384	Uncharacterized protein.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.827
C3XS24_BRAFL	C3Z475_BRAFL	C3XS24	C3Z475	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.981
C3XS24_BRAFL	C3ZEM6_BRAFL	C3XS24	C3ZEM6	Uncharacterized protein.	Autophagy-related protein 3.	0.711
C3XS24_BRAFL	C3ZEY1_BRAFL	C3XS24	C3ZEY1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.711
C3XS24_BRAFL	C3ZFN7_BRAFL	C3XS24	C3ZFN7	Uncharacterized protein.	Autophagy_act_C domain-containing protein.	0.706
C3XS24_BRAFL	C3ZJI8_BRAFL	C3XS24	C3ZJI8	Uncharacterized protein.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.711
C3XS24_BRAFL	C3ZNT2_BRAFL	C3XS24	C3ZNT2	Uncharacterized protein.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.716
C3YUE8_BRAFL	C3XS24_BRAFL	C3YUE8	C3XS24	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Uncharacterized protein.	0.711
C3YUE8_BRAFL	C3YWN0_BRAFL	C3YUE8	C3YWN0	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Uncharacterized protein.	0.916
C3YUE8_BRAFL	C3Z384_BRAFL	C3YUE8	C3Z384	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.	0.779
C3YUE8_BRAFL	C3Z475_BRAFL	C3YUE8	C3Z475	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.762
C3YUE8_BRAFL	C3ZEM6_BRAFL	C3YUE8	C3ZEM6	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Autophagy-related protein 3.	0.998
C3YUE8_BRAFL	C3ZEY1_BRAFL	C3YUE8	C3ZEY1	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	WD_REPEATS_REGION domain-containing protein.	0.904
C3YUE8_BRAFL	C3ZFN7_BRAFL	C3YUE8	C3ZFN7	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Autophagy_act_C domain-containing protein.	0.919
C3YUE8_BRAFL	C3ZJI8_BRAFL	C3YUE8	C3ZJI8	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.989
C3YUE8_BRAFL	C3ZNT2_BRAFL	C3YUE8	C3ZNT2	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.920
C3YWN0_BRAFL	C3XS24_BRAFL	C3YWN0	C3XS24	Uncharacterized protein.	Uncharacterized protein.	0.996
C3YWN0_BRAFL	C3YUE8_BRAFL	C3YWN0	C3YUE8	Uncharacterized protein.	Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.	0.916