(38 nodes) Axonemal microtubule, and Outer dynein arm assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XUE0_BRAFL	Uncharacterized protein. (153 aa)
	C3XVZ0_BRAFL	Uncharacterized protein. (221 aa)
	Islet	Uncharacterized protein. (528 aa)
	C3Y2P9_BRAFL	Uncharacterized protein. (250 aa)
	C3YBY6_BRAFL	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (416 aa)
	C3YCA1_BRAFL	WD_REPEATS_REGION domain-containing protein. (625 aa)
	C3YDJ9_BRAFL	Uncharacterized protein. (537 aa)
	C3YDQ7_BRAFL	Uncharacterized protein. (499 aa)
	C3YEZ0_BRAFL	Uncharacterized protein. (1074 aa)
	C3YF46_BRAFL	Uncharacterized protein. (420 aa)
	C3YIE9_BRAFL	Uncharacterized protein. (138 aa)
	C3YKY7_BRAFL	Uncharacterized protein. (149 aa)
	C3YQF2_BRAFL	Uncharacterized protein. (641 aa)
	C3YSP0_BRAFL	Uncharacterized protein. (499 aa)
	C3YTW1_BRAFL	Uncharacterized protein. (311 aa)
	C3YTZ3_BRAFL	Uncharacterized protein. (549 aa)
	C3YXU7_BRAFL	Transgelin; Belongs to the calponin family. (234 aa)
	C3YYE7_BRAFL	Uncharacterized protein. (576 aa)
	C3YYJ1_BRAFL	Uncharacterized protein. (577 aa)
	C3Z2Q4_BRAFL	Uncharacterized protein. (379 aa)
	C3Z327_BRAFL	Uncharacterized protein. (239 aa)
	C3Z3P2_BRAFL	Uncharacterized protein. (100 aa)
	C3Z547_BRAFL	Uncharacterized protein. (244 aa)
	C3Z614_BRAFL	Uncharacterized protein. (199 aa)
	C3Z6R5_BRAFL	Uncharacterized protein. (863 aa)
	C3Z6R8_BRAFL	Uncharacterized protein. (1477 aa)
	C3ZA11_BRAFL	Uncharacterized protein. (206 aa)
	C3ZB94_BRAFL	DUF667 domain-containing protein. (193 aa)
	C3ZCL6_BRAFL	Uncharacterized protein. (154 aa)
	C3ZDQ1_BRAFL	Uncharacterized protein. (722 aa)
	C3ZFS9_BRAFL	Uncharacterized protein. (169 aa)
	C3ZI55_BRAFL	Uncharacterized protein. (221 aa)
	C3ZI69_BRAFL	Uncharacterized protein. (165 aa)
	C3ZI84_BRAFL	Uncharacterized protein. (253 aa)
	C3ZL48_BRAFL	Uncharacterized protein. (402 aa)
	C3ZMQ7_BRAFL	Uncharacterized protein. (445 aa)
	C3ZR63_BRAFL	Enkurin domain-containing protein. (276 aa)
	C3ZTM2_BRAFL	Nuclear receptor domain-containing protein. (1232 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XUE0_BRAFL	C3YCA1_BRAFL	C3XUE0	C3YCA1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.441
C3XUE0_BRAFL	C3YIE9_BRAFL	C3XUE0	C3YIE9	Uncharacterized protein.	Uncharacterized protein.	0.401
C3XUE0_BRAFL	C3YKY7_BRAFL	C3XUE0	C3YKY7	Uncharacterized protein.	Uncharacterized protein.	0.665
C3XUE0_BRAFL	C3YSP0_BRAFL	C3XUE0	C3YSP0	Uncharacterized protein.	Uncharacterized protein.	0.414
C3XUE0_BRAFL	C3YYJ1_BRAFL	C3XUE0	C3YYJ1	Uncharacterized protein.	Uncharacterized protein.	0.421
C3XUE0_BRAFL	C3Z3P2_BRAFL	C3XUE0	C3Z3P2	Uncharacterized protein.	Uncharacterized protein.	0.425
C3XUE0_BRAFL	C3Z547_BRAFL	C3XUE0	C3Z547	Uncharacterized protein.	Uncharacterized protein.	0.421
C3XUE0_BRAFL	C3ZI84_BRAFL	C3XUE0	C3ZI84	Uncharacterized protein.	Uncharacterized protein.	0.420
C3XUE0_BRAFL	C3ZR63_BRAFL	C3XUE0	C3ZR63	Uncharacterized protein.	Enkurin domain-containing protein.	0.454
C3XUE0_BRAFL	C3ZTM2_BRAFL	C3XUE0	C3ZTM2	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.409
C3XVZ0_BRAFL	C3YCA1_BRAFL	C3XVZ0	C3YCA1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.849
C3XVZ0_BRAFL	C3YDJ9_BRAFL	C3XVZ0	C3YDJ9	Uncharacterized protein.	Uncharacterized protein.	0.416
C3XVZ0_BRAFL	C3YDQ7_BRAFL	C3XVZ0	C3YDQ7	Uncharacterized protein.	Uncharacterized protein.	0.821
C3XVZ0_BRAFL	C3YEZ0_BRAFL	C3XVZ0	C3YEZ0	Uncharacterized protein.	Uncharacterized protein.	0.579
C3XVZ0_BRAFL	C3YF46_BRAFL	C3XVZ0	C3YF46	Uncharacterized protein.	Uncharacterized protein.	0.829
C3XVZ0_BRAFL	C3YKY7_BRAFL	C3XVZ0	C3YKY7	Uncharacterized protein.	Uncharacterized protein.	0.826
C3XVZ0_BRAFL	C3YQF2_BRAFL	C3XVZ0	C3YQF2	Uncharacterized protein.	Uncharacterized protein.	0.924
C3XVZ0_BRAFL	C3YSP0_BRAFL	C3XVZ0	C3YSP0	Uncharacterized protein.	Uncharacterized protein.	0.817
C3XVZ0_BRAFL	C3YTW1_BRAFL	C3XVZ0	C3YTW1	Uncharacterized protein.	Uncharacterized protein.	0.402
C3XVZ0_BRAFL	C3YTZ3_BRAFL	C3XVZ0	C3YTZ3	Uncharacterized protein.	Uncharacterized protein.	0.470