(5 nodes) Tubulin/FtsZ family, GTPase domain, and Beta tubulin network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y2K0_BRAFL	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (298 aa)
	C3Y2K1_BRAFL	Tubulin domain-containing protein. (125 aa)
	C3Y2M3_BRAFL	Tubulin_C domain-containing protein. (154 aa)
	C3YMF2_BRAFL	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (331 aa)
	C3ZUW5_BRAFL	Tubulin domain-containing protein. (127 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y2K0_BRAFL	C3Y2K1_BRAFL	C3Y2K0	C3Y2K1	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin domain-containing protein.	0.949
C3Y2K0_BRAFL	C3YMF2_BRAFL	C3Y2K0	C3YMF2	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.678
C3Y2K0_BRAFL	C3ZUW5_BRAFL	C3Y2K0	C3ZUW5	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	Tubulin domain-containing protein.	0.949
C3Y2K1_BRAFL	C3Y2K0_BRAFL	C3Y2K1	C3Y2K0	Tubulin domain-containing protein.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.949
C3Y2K1_BRAFL	C3Y2M3_BRAFL	C3Y2K1	C3Y2M3	Tubulin domain-containing protein.	Tubulin_C domain-containing protein.	0.946
C3Y2K1_BRAFL	C3YMF2_BRAFL	C3Y2K1	C3YMF2	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.979
C3Y2M3_BRAFL	C3Y2K1_BRAFL	C3Y2M3	C3Y2K1	Tubulin_C domain-containing protein.	Tubulin domain-containing protein.	0.946
C3Y2M3_BRAFL	C3YMF2_BRAFL	C3Y2M3	C3YMF2	Tubulin_C domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.678
C3Y2M3_BRAFL	C3ZUW5_BRAFL	C3Y2M3	C3ZUW5	Tubulin_C domain-containing protein.	Tubulin domain-containing protein.	0.947
C3YMF2_BRAFL	C3Y2K0_BRAFL	C3YMF2	C3Y2K0	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.678
C3YMF2_BRAFL	C3Y2K1_BRAFL	C3YMF2	C3Y2K1	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.979
C3YMF2_BRAFL	C3Y2M3_BRAFL	C3YMF2	C3Y2M3	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin_C domain-containing protein.	0.678
C3YMF2_BRAFL	C3ZUW5_BRAFL	C3YMF2	C3ZUW5	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	Tubulin domain-containing protein.	0.946
C3ZUW5_BRAFL	C3Y2K0_BRAFL	C3ZUW5	C3Y2K0	Tubulin domain-containing protein.	Uncharacterized protein; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.949
C3ZUW5_BRAFL	C3Y2M3_BRAFL	C3ZUW5	C3Y2M3	Tubulin domain-containing protein.	Tubulin_C domain-containing protein.	0.947
C3ZUW5_BRAFL	C3YMF2_BRAFL	C3ZUW5	C3YMF2	Tubulin domain-containing protein.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.	0.946