(5 nodes) Ndc80 complex, and LRR domain binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y238_BRAFL	Uncharacterized protein. (158 aa)
	C3YG44_BRAFL	Uncharacterized protein. (263 aa)
	C3YH55_BRAFL	Uncharacterized protein. (579 aa)
	C3YW70_BRAFL	Uncharacterized protein. (306 aa)
	C3ZHM8_BRAFL	Uncharacterized protein. (252 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y238_BRAFL	C3YG44_BRAFL	C3Y238	C3YG44	Uncharacterized protein.	Uncharacterized protein.	0.885
C3Y238_BRAFL	C3YH55_BRAFL	C3Y238	C3YH55	Uncharacterized protein.	Uncharacterized protein.	0.731
C3Y238_BRAFL	C3YW70_BRAFL	C3Y238	C3YW70	Uncharacterized protein.	Uncharacterized protein.	0.632
C3Y238_BRAFL	C3ZHM8_BRAFL	C3Y238	C3ZHM8	Uncharacterized protein.	Uncharacterized protein.	0.710
C3YG44_BRAFL	C3Y238_BRAFL	C3YG44	C3Y238	Uncharacterized protein.	Uncharacterized protein.	0.885
C3YG44_BRAFL	C3YH55_BRAFL	C3YG44	C3YH55	Uncharacterized protein.	Uncharacterized protein.	0.995
C3YG44_BRAFL	C3YW70_BRAFL	C3YG44	C3YW70	Uncharacterized protein.	Uncharacterized protein.	0.892
C3YG44_BRAFL	C3ZHM8_BRAFL	C3YG44	C3ZHM8	Uncharacterized protein.	Uncharacterized protein.	0.994
C3YH55_BRAFL	C3Y238_BRAFL	C3YH55	C3Y238	Uncharacterized protein.	Uncharacterized protein.	0.731
C3YH55_BRAFL	C3YG44_BRAFL	C3YH55	C3YG44	Uncharacterized protein.	Uncharacterized protein.	0.995
C3YH55_BRAFL	C3YW70_BRAFL	C3YH55	C3YW70	Uncharacterized protein.	Uncharacterized protein.	0.916
C3YH55_BRAFL	C3ZHM8_BRAFL	C3YH55	C3ZHM8	Uncharacterized protein.	Uncharacterized protein.	0.999
C3YW70_BRAFL	C3Y238_BRAFL	C3YW70	C3Y238	Uncharacterized protein.	Uncharacterized protein.	0.632
C3YW70_BRAFL	C3YG44_BRAFL	C3YW70	C3YG44	Uncharacterized protein.	Uncharacterized protein.	0.892
C3YW70_BRAFL	C3YH55_BRAFL	C3YW70	C3YH55	Uncharacterized protein.	Uncharacterized protein.	0.916
C3YW70_BRAFL	C3ZHM8_BRAFL	C3YW70	C3ZHM8	Uncharacterized protein.	Uncharacterized protein.	0.902
C3ZHM8_BRAFL	C3Y238_BRAFL	C3ZHM8	C3Y238	Uncharacterized protein.	Uncharacterized protein.	0.710
C3ZHM8_BRAFL	C3YG44_BRAFL	C3ZHM8	C3YG44	Uncharacterized protein.	Uncharacterized protein.	0.994
C3ZHM8_BRAFL	C3YH55_BRAFL	C3ZHM8	C3YH55	Uncharacterized protein.	Uncharacterized protein.	0.999
C3ZHM8_BRAFL	C3YW70_BRAFL	C3ZHM8	C3YW70	Uncharacterized protein.	Uncharacterized protein.	0.902