(27 nodes) COPI-independent Golgi-to-ER retrograde traffic, and Actin, conserved site network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

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co-expression

protein homology

Your Input:
	C3XR47_BRAFL	Uncharacterized protein. (187 aa)
	C3XRA0_BRAFL	Uncharacterized protein; Belongs to the actin family. (448 aa)
	C3XTX4_BRAFL	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (494 aa)
	C3XYD2_BRAFL	Uncharacterized protein. (363 aa)
	C3Y5C1_BRAFL	Uncharacterized protein. (376 aa)
	C3Y9B8_BRAFL	Uncharacterized protein. (112 aa)
	C3YA29_BRAFL	WD_REPEATS_REGION domain-containing protein. (616 aa)
	C3YCZ9_BRAFL	CARMIL_C domain-containing protein. (1859 aa)
	C3YF60_BRAFL	Uncharacterized protein. (484 aa)
	C3YJ18_BRAFL	Uncharacterized protein. (349 aa)
	C3YJ64_BRAFL	CAP-Gly domain-containing protein. (113 aa)
	C3YJ65_BRAFL	Dynactin domain-containing protein. (1139 aa)
	C3YN80_BRAFL	Uncharacterized protein. (996 aa)
	C3Z5H7_BRAFL	Uncharacterized protein. (468 aa)
	C3Z5J8_BRAFL	Uncharacterized protein. (366 aa)
	C3ZAE7_BRAFL	Uncharacterized protein. (328 aa)
	C3ZAR1_BRAFL	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (286 aa)
	C3ZB47_BRAFL	Uncharacterized protein. (444 aa)
	C3ZEY6_BRAFL	CAP-Gly domain-containing protein. (233 aa)
	C3ZHP4_BRAFL	Uncharacterized protein. (454 aa)
	C3ZIN7_BRAFL	Uncharacterized protein. (379 aa)
	C3ZKY9_BRAFL	Uncharacterized protein. (733 aa)
	C3ZLQ1_BRAFL	Uncharacterized protein; Belongs to the actin family. (192 aa)
	C3ZMR8_BRAFL	Uncharacterized protein. (121 aa)
	C3ZTX4_BRAFL	Uncharacterized protein; Belongs to the actin family. (345 aa)
	C3ZVQ5_BRAFL	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (238 aa)
	C3ZX51_BRAFL	Uncharacterized protein. (175 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XR47_BRAFL	C3XRA0_BRAFL	C3XR47	C3XRA0	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.986
C3XR47_BRAFL	C3XTX4_BRAFL	C3XR47	C3XTX4	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.794
C3XR47_BRAFL	C3XYD2_BRAFL	C3XR47	C3XYD2	Uncharacterized protein.	Uncharacterized protein.	0.733
C3XR47_BRAFL	C3Y5C1_BRAFL	C3XR47	C3Y5C1	Uncharacterized protein.	Uncharacterized protein.	0.930
C3XR47_BRAFL	C3Y9B8_BRAFL	C3XR47	C3Y9B8	Uncharacterized protein.	Uncharacterized protein.	0.764
C3XR47_BRAFL	C3YA29_BRAFL	C3XR47	C3YA29	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.885
C3XR47_BRAFL	C3YF60_BRAFL	C3XR47	C3YF60	Uncharacterized protein.	Uncharacterized protein.	0.986
C3XR47_BRAFL	C3YJ18_BRAFL	C3XR47	C3YJ18	Uncharacterized protein.	Uncharacterized protein.	0.867
C3XR47_BRAFL	C3YJ64_BRAFL	C3XR47	C3YJ64	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.971
C3XR47_BRAFL	C3YJ65_BRAFL	C3XR47	C3YJ65	Uncharacterized protein.	Dynactin domain-containing protein.	0.971
C3XR47_BRAFL	C3YN80_BRAFL	C3XR47	C3YN80	Uncharacterized protein.	Uncharacterized protein.	0.532
C3XR47_BRAFL	C3Z5H7_BRAFL	C3XR47	C3Z5H7	Uncharacterized protein.	Uncharacterized protein.	0.974
C3XR47_BRAFL	C3Z5J8_BRAFL	C3XR47	C3Z5J8	Uncharacterized protein.	Uncharacterized protein.	0.974
C3XR47_BRAFL	C3ZAR1_BRAFL	C3XR47	C3ZAR1	Uncharacterized protein.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.921
C3XR47_BRAFL	C3ZEY6_BRAFL	C3XR47	C3ZEY6	Uncharacterized protein.	CAP-Gly domain-containing protein.	0.867
C3XR47_BRAFL	C3ZHP4_BRAFL	C3XR47	C3ZHP4	Uncharacterized protein.	Uncharacterized protein.	0.994
C3XR47_BRAFL	C3ZIN7_BRAFL	C3XR47	C3ZIN7	Uncharacterized protein.	Uncharacterized protein.	0.930
C3XR47_BRAFL	C3ZKY9_BRAFL	C3XR47	C3ZKY9	Uncharacterized protein.	Uncharacterized protein.	0.461
C3XR47_BRAFL	C3ZLQ1_BRAFL	C3XR47	C3ZLQ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the actin family.	0.718
C3XR47_BRAFL	C3ZMR8_BRAFL	C3XR47	C3ZMR8	Uncharacterized protein.	Uncharacterized protein.	0.733