(35 nodes) Cytoplasmic dynein complex, and Dynein light chain type 1 network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XTI6_BRAFL	Uncharacterized protein. (105 aa)
	C3XVH2_BRAFL	Uncharacterized protein. (99 aa)
	C3XVM4_BRAFL	Dynein light chain. (89 aa)
	C3XXR3_BRAFL	DHC_N1 domain-containing protein. (913 aa)
	C3XXR4_BRAFL	Uncharacterized protein. (1503 aa)
	C3XXR5_BRAFL	AAA_8 domain-containing protein. (442 aa)
	C3XXR6_BRAFL	Uncharacterized protein. (697 aa)
	C3XXR7_BRAFL	Uncharacterized protein. (747 aa)
	C3XXX5_BRAFL	Uncharacterized protein. (254 aa)
	C3XZF8_BRAFL	AAA domain-containing protein. (2026 aa)
	C3XZF9_BRAFL	Uncharacterized protein. (2795 aa)
	C3Y751_BRAFL	Uncharacterized protein. (170 aa)
	C3Y7V4_BRAFL	Uncharacterized protein. (603 aa)
	C3YA42_BRAFL	Uncharacterized protein. (224 aa)
	C3YA43_BRAFL	Uncharacterized protein. (217 aa)
	C3YCI5_BRAFL	Uncharacterized protein. (122 aa)
	C3YDU2_BRAFL	Uncharacterized protein. (119 aa)
	C3YHX2_BRAFL	Uncharacterized protein. (582 aa)
	C3YHX4_BRAFL	Uncharacterized protein. (584 aa)
	C3YHX7_BRAFL	Uncharacterized protein. (388 aa)
	C3YHZ5_BRAFL	Uncharacterized protein. (585 aa)
	C3YMC3_BRAFL	Uncharacterized protein. (182 aa)
	C3YNF2_BRAFL	Dynein light chain. (89 aa)
	C3YTX2_BRAFL	Uncharacterized protein. (122 aa)
	C3YXG0_BRAFL	Uncharacterized protein. (126 aa)
	C3YZZ0_BRAFL	Uncharacterized protein. (349 aa)
	C3Z2U1_BRAFL	Uncharacterized protein. (62 aa)
	C3Z3W6_BRAFL	Uncharacterized protein. (376 aa)
	C3ZGK1_BRAFL	WD_REPEATS_REGION domain-containing protein. (432 aa)
	C3ZNJ8_BRAFL	Dynein light chain. (53 aa)
	C3ZNJ9_BRAFL	Dynein light chain. (151 aa)
	C3ZNK0_BRAFL	Dynein light chain. (86 aa)
	C3ZNK1_BRAFL	Dynein light chain. (125 aa)
	C3ZW03_BRAFL	Uncharacterized protein. (124 aa)
	C3ZZP6_BRAFL	Uncharacterized protein. (68 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTI6_BRAFL	C3XVH2_BRAFL	C3XTI6	C3XVH2	Uncharacterized protein.	Uncharacterized protein.	0.741
C3XTI6_BRAFL	C3XVM4_BRAFL	C3XTI6	C3XVM4	Uncharacterized protein.	Dynein light chain.	0.877
C3XTI6_BRAFL	C3XXR4_BRAFL	C3XTI6	C3XXR4	Uncharacterized protein.	Uncharacterized protein.	0.686
C3XTI6_BRAFL	C3XXR7_BRAFL	C3XTI6	C3XXR7	Uncharacterized protein.	Uncharacterized protein.	0.686
C3XTI6_BRAFL	C3XXX5_BRAFL	C3XTI6	C3XXX5	Uncharacterized protein.	Uncharacterized protein.	0.741
C3XTI6_BRAFL	C3Y751_BRAFL	C3XTI6	C3Y751	Uncharacterized protein.	Uncharacterized protein.	0.743
C3XTI6_BRAFL	C3Y7V4_BRAFL	C3XTI6	C3Y7V4	Uncharacterized protein.	Uncharacterized protein.	0.540
C3XTI6_BRAFL	C3YA42_BRAFL	C3XTI6	C3YA42	Uncharacterized protein.	Uncharacterized protein.	0.741
C3XTI6_BRAFL	C3YA43_BRAFL	C3XTI6	C3YA43	Uncharacterized protein.	Uncharacterized protein.	0.741
C3XTI6_BRAFL	C3YCI5_BRAFL	C3XTI6	C3YCI5	Uncharacterized protein.	Uncharacterized protein.	0.809
C3XTI6_BRAFL	C3YDU2_BRAFL	C3XTI6	C3YDU2	Uncharacterized protein.	Uncharacterized protein.	0.741
C3XTI6_BRAFL	C3YHX2_BRAFL	C3XTI6	C3YHX2	Uncharacterized protein.	Uncharacterized protein.	0.658
C3XTI6_BRAFL	C3YHX4_BRAFL	C3XTI6	C3YHX4	Uncharacterized protein.	Uncharacterized protein.	0.754
C3XTI6_BRAFL	C3YHX7_BRAFL	C3XTI6	C3YHX7	Uncharacterized protein.	Uncharacterized protein.	0.754
C3XTI6_BRAFL	C3YHZ5_BRAFL	C3XTI6	C3YHZ5	Uncharacterized protein.	Uncharacterized protein.	0.658
C3XTI6_BRAFL	C3YMC3_BRAFL	C3XTI6	C3YMC3	Uncharacterized protein.	Uncharacterized protein.	0.743
C3XTI6_BRAFL	C3YNF2_BRAFL	C3XTI6	C3YNF2	Uncharacterized protein.	Dynein light chain.	0.877
C3XTI6_BRAFL	C3YTX2_BRAFL	C3XTI6	C3YTX2	Uncharacterized protein.	Uncharacterized protein.	0.783
C3XTI6_BRAFL	C3YXG0_BRAFL	C3XTI6	C3YXG0	Uncharacterized protein.	Uncharacterized protein.	0.783
C3XTI6_BRAFL	C3YZZ0_BRAFL	C3XTI6	C3YZZ0	Uncharacterized protein.	Uncharacterized protein.	0.754