(15 nodes) Mixed, incl. Nucleotide-activated protein kinase complex, and PPM-type phosphatase, divalent cation binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPJ6_BRAFL	PPM-type phosphatase domain-containing protein. (373 aa)
	C3XTE9_BRAFL	Uncharacterized protein. (482 aa)
	C3XTU7_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (296 aa)
	C3XY35_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (442 aa)
	C3XZ56_BRAFL	PPM-type phosphatase domain-containing protein. (382 aa)
	C3Y0T7_BRAFL	AMPKBI domain-containing protein. (256 aa)
	C3YBW1_BRAFL	Uncharacterized protein. (304 aa)
	C3YCL4_BRAFL	Non-specific serine/threonine protein kinase. (492 aa)
	C3YGD6_BRAFL	AMPK1_CBM domain-containing protein. (323 aa)
	C3YKR5_BRAFL	Uncharacterized protein. (1716 aa)
	C3YMQ1_BRAFL	Protein kinase domain-containing protein. (337 aa)
	C3YPM3_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (270 aa)
	C3YXY7_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (305 aa)
	C3ZE25_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (282 aa)
	C3ZNQ5_BRAFL	Protein kinase domain-containing protein. (1064 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTE9_BRAFL	C3Y0T7_BRAFL	C3XTE9	C3Y0T7	Uncharacterized protein.	AMPKBI domain-containing protein.	0.694
C3XTE9_BRAFL	C3YBW1_BRAFL	C3XTE9	C3YBW1	Uncharacterized protein.	Uncharacterized protein.	0.697
C3XTE9_BRAFL	C3YCL4_BRAFL	C3XTE9	C3YCL4	Uncharacterized protein.	Non-specific serine/threonine protein kinase.	0.714
C3XTE9_BRAFL	C3YGD6_BRAFL	C3XTE9	C3YGD6	Uncharacterized protein.	AMPK1_CBM domain-containing protein.	0.567
C3XTE9_BRAFL	C3YKR5_BRAFL	C3XTE9	C3YKR5	Uncharacterized protein.	Uncharacterized protein.	0.567
C3XTU7_BRAFL	C3XZ56_BRAFL	C3XTU7	C3XZ56	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PPM-type phosphatase domain-containing protein.	0.444
C3XTU7_BRAFL	C3Y0T7_BRAFL	C3XTU7	C3Y0T7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	AMPKBI domain-containing protein.	0.720
C3XTU7_BRAFL	C3YBW1_BRAFL	C3XTU7	C3YBW1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.730
C3XTU7_BRAFL	C3YGD6_BRAFL	C3XTU7	C3YGD6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	AMPK1_CBM domain-containing protein.	0.535
C3XTU7_BRAFL	C3YKR5_BRAFL	C3XTU7	C3YKR5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.535
C3XTU7_BRAFL	C3YPM3_BRAFL	C3XTU7	C3YPM3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.412
C3XY35_BRAFL	C3XZ56_BRAFL	C3XY35	C3XZ56	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PPM-type phosphatase domain-containing protein.	0.416
C3XY35_BRAFL	C3Y0T7_BRAFL	C3XY35	C3Y0T7	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	AMPKBI domain-containing protein.	0.535
C3XY35_BRAFL	C3YBW1_BRAFL	C3XY35	C3YBW1	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.664
C3XY35_BRAFL	C3YGD6_BRAFL	C3XY35	C3YGD6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	AMPK1_CBM domain-containing protein.	0.535
C3XY35_BRAFL	C3YKR5_BRAFL	C3XY35	C3YKR5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.535
C3XY35_BRAFL	C3YPM3_BRAFL	C3XY35	C3YPM3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.403
C3XZ56_BRAFL	C3XTU7_BRAFL	C3XZ56	C3XTU7	PPM-type phosphatase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.444
C3XZ56_BRAFL	C3XY35_BRAFL	C3XZ56	C3XY35	PPM-type phosphatase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.416
C3XZ56_BRAFL	C3Y0T7_BRAFL	C3XZ56	C3Y0T7	PPM-type phosphatase domain-containing protein.	AMPKBI domain-containing protein.	0.646