(17 nodes) Mixed, incl. Dopamine Neurotransmitter Release Cycle, and Rab-binding domain network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y1H1_BRAFL	C2 domain-containing protein. (138 aa)
	C3Y1H2_BRAFL	Uncharacterized protein. (1144 aa)
	C3Y3Z5_BRAFL	Uncharacterized protein. (146 aa)
	C3Y6U6_BRAFL	MHD2 domain-containing protein. (1621 aa)
	C3Y7R3_BRAFL	Uncharacterized protein; Belongs to the MAGUK family. (1216 aa)
	C3YNU7_BRAFL	Uncharacterized protein. (343 aa)
	C3YPR3_BRAFL	RabBD domain-containing protein. (257 aa)
	C3Z6X5_BRAFL	Uncharacterized protein. (184 aa)
	C3ZA62_BRAFL	Uncharacterized protein. (956 aa)
	C3ZAP3_BRAFL	ATP-grasp domain-containing protein. (393 aa)
	C3ZK90_BRAFL	Uncharacterized protein. (274 aa)
	C3ZLP3_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (589 aa)
	C3ZLU0_BRAFL	SAM domain-containing protein. (969 aa)
	C3ZQN2_BRAFL	PDZ domain-containing protein. (118 aa)
	C3ZQN3_BRAFL	C2 domain-containing protein. (116 aa)
	C3ZYV3_BRAFL	Fibronectin type-III domain-containing protein. (702 aa)
	C4A0W4_BRAFL	Uncharacterized protein. (99 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y1H1_BRAFL	C3Y1H2_BRAFL	C3Y1H1	C3Y1H2	C2 domain-containing protein.	Uncharacterized protein.	0.900
C3Y1H1_BRAFL	C3Y3Z5_BRAFL	C3Y1H1	C3Y3Z5	C2 domain-containing protein.	Uncharacterized protein.	0.591
C3Y1H1_BRAFL	C3Y7R3_BRAFL	C3Y1H1	C3Y7R3	C2 domain-containing protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.949
C3Y1H1_BRAFL	C3YNU7_BRAFL	C3Y1H1	C3YNU7	C2 domain-containing protein.	Uncharacterized protein.	0.577
C3Y1H1_BRAFL	C3YPR3_BRAFL	C3Y1H1	C3YPR3	C2 domain-containing protein.	RabBD domain-containing protein.	0.997
C3Y1H1_BRAFL	C3ZA62_BRAFL	C3Y1H1	C3ZA62	C2 domain-containing protein.	Uncharacterized protein.	0.809
C3Y1H1_BRAFL	C3ZAP3_BRAFL	C3Y1H1	C3ZAP3	C2 domain-containing protein.	ATP-grasp domain-containing protein.	0.665
C3Y1H1_BRAFL	C3ZK90_BRAFL	C3Y1H1	C3ZK90	C2 domain-containing protein.	Uncharacterized protein.	0.427
C3Y1H1_BRAFL	C3ZLP3_BRAFL	C3Y1H1	C3ZLP3	C2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.427
C3Y1H1_BRAFL	C3ZLU0_BRAFL	C3Y1H1	C3ZLU0	C2 domain-containing protein.	SAM domain-containing protein.	0.575
C3Y1H1_BRAFL	C3ZQN2_BRAFL	C3Y1H1	C3ZQN2	C2 domain-containing protein.	PDZ domain-containing protein.	0.997
C3Y1H1_BRAFL	C3ZQN3_BRAFL	C3Y1H1	C3ZQN3	C2 domain-containing protein.	C2 domain-containing protein.	0.997
C3Y1H1_BRAFL	C3ZYV3_BRAFL	C3Y1H1	C3ZYV3	C2 domain-containing protein.	Fibronectin type-III domain-containing protein.	0.702
C3Y1H1_BRAFL	C4A0W4_BRAFL	C3Y1H1	C4A0W4	C2 domain-containing protein.	Uncharacterized protein.	0.427
C3Y1H2_BRAFL	C3Y1H1_BRAFL	C3Y1H2	C3Y1H1	Uncharacterized protein.	C2 domain-containing protein.	0.900
C3Y1H2_BRAFL	C3Y3Z5_BRAFL	C3Y1H2	C3Y3Z5	Uncharacterized protein.	Uncharacterized protein.	0.591
C3Y1H2_BRAFL	C3Y7R3_BRAFL	C3Y1H2	C3Y7R3	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.949
C3Y1H2_BRAFL	C3YNU7_BRAFL	C3Y1H2	C3YNU7	Uncharacterized protein.	Uncharacterized protein.	0.589
C3Y1H2_BRAFL	C3YPR3_BRAFL	C3Y1H2	C3YPR3	Uncharacterized protein.	RabBD domain-containing protein.	0.997
C3Y1H2_BRAFL	C3ZA62_BRAFL	C3Y1H2	C3ZA62	Uncharacterized protein.	Uncharacterized protein.	0.809