31 items (Branchiostoma floridae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPG2_BRAFL	Uncharacterized protein. (262 aa)
	C3XQJ3_BRAFL	Uncharacterized protein. (506 aa)
	C3XRA6_BRAFL	Uncharacterized protein. (226 aa)
	C3XU11_BRAFL	DUF4392 domain-containing protein. (615 aa)
	C3Y292_BRAFL	Uncharacterized protein. (440 aa)
	C3Y363_BRAFL	DUF4392 domain-containing protein. (592 aa)
	C3Y907_BRAFL	GMC_oxred_C domain-containing protein. (493 aa)
	C3Y9G8_BRAFL	WD_REPEATS_REGION domain-containing protein. (1402 aa)
	C3Y9R6_BRAFL	Uncharacterized protein. (453 aa)
	C3Y9Y7_BRAFL	Uncharacterized protein. (556 aa)
	C3YCA6_BRAFL	Lipoxygenase domain-containing protein. (876 aa)
	C3YGK1_BRAFL	Uncharacterized protein. (410 aa)
	C3YI17_BRAFL	Uncharacterized protein. (819 aa)
	C3YID6_BRAFL	Uncharacterized protein. (138 aa)
	C3YMT5_BRAFL	ANAPC4_WD40 domain-containing protein. (1063 aa)
	C3YN37_BRAFL	Uncharacterized protein. (1290 aa)
	C3YV44_BRAFL	WD_REPEATS_REGION domain-containing protein. (1189 aa)
	C3Z0T8_BRAFL	WD_REPEATS_REGION domain-containing protein. (1351 aa)
	C3Z1D2_BRAFL	Uncharacterized protein. (279 aa)
	C3Z7T3_BRAFL	Uncharacterized protein. (421 aa)
	C3Z7W0_BRAFL	Uncharacterized protein. (210 aa)
	C3Z7W1_BRAFL	Uncharacterized protein. (434 aa)
	C3Z9C9_BRAFL	Uncharacterized protein. (148 aa)
	C3ZAW0_BRAFL	GMC_oxred_C domain-containing protein. (105 aa)
	C3ZCM2_BRAFL	DUF4392 domain-containing protein. (452 aa)
	C3ZCW1_BRAFL	WD_REPEATS_REGION domain-containing protein. (1683 aa)
	C3ZD24_BRAFL	Uncharacterized protein. (3304 aa)
	C3ZDJ4_BRAFL	WD_REPEATS_REGION domain-containing protein. (771 aa)
	C3ZHB0_BRAFL	GMC_oxred_C domain-containing protein. (430 aa)
	C3ZHU7_BRAFL	Uncharacterized protein. (132 aa)
	C3ZRU4_BRAFL	Uncharacterized protein. (187 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPG2_BRAFL	C3XQJ3_BRAFL	C3XPG2	C3XQJ3	Uncharacterized protein.	Uncharacterized protein.	0.970
C3XPG2_BRAFL	C3XRA6_BRAFL	C3XPG2	C3XRA6	Uncharacterized protein.	Uncharacterized protein.	0.850
C3XPG2_BRAFL	C3Y292_BRAFL	C3XPG2	C3Y292	Uncharacterized protein.	Uncharacterized protein.	0.989
C3XPG2_BRAFL	C3Y9G8_BRAFL	C3XPG2	C3Y9G8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.908
C3XPG2_BRAFL	C3Y9Y7_BRAFL	C3XPG2	C3Y9Y7	Uncharacterized protein.	Uncharacterized protein.	0.974
C3XPG2_BRAFL	C3YGK1_BRAFL	C3XPG2	C3YGK1	Uncharacterized protein.	Uncharacterized protein.	0.972
C3XPG2_BRAFL	C3YI17_BRAFL	C3XPG2	C3YI17	Uncharacterized protein.	Uncharacterized protein.	0.944
C3XPG2_BRAFL	C3YID6_BRAFL	C3XPG2	C3YID6	Uncharacterized protein.	Uncharacterized protein.	0.962
C3XPG2_BRAFL	C3YMT5_BRAFL	C3XPG2	C3YMT5	Uncharacterized protein.	ANAPC4_WD40 domain-containing protein.	0.891
C3XPG2_BRAFL	C3YN37_BRAFL	C3XPG2	C3YN37	Uncharacterized protein.	Uncharacterized protein.	0.895
C3XPG2_BRAFL	C3YV44_BRAFL	C3XPG2	C3YV44	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.939
C3XPG2_BRAFL	C3Z0T8_BRAFL	C3XPG2	C3Z0T8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.907
C3XPG2_BRAFL	C3Z7T3_BRAFL	C3XPG2	C3Z7T3	Uncharacterized protein.	Uncharacterized protein.	0.954
C3XPG2_BRAFL	C3Z7W0_BRAFL	C3XPG2	C3Z7W0	Uncharacterized protein.	Uncharacterized protein.	0.937
C3XPG2_BRAFL	C3Z7W1_BRAFL	C3XPG2	C3Z7W1	Uncharacterized protein.	Uncharacterized protein.	0.971
C3XPG2_BRAFL	C3Z9C9_BRAFL	C3XPG2	C3Z9C9	Uncharacterized protein.	Uncharacterized protein.	0.939
C3XPG2_BRAFL	C3ZCW1_BRAFL	C3XPG2	C3ZCW1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.970
C3XPG2_BRAFL	C3ZDJ4_BRAFL	C3XPG2	C3ZDJ4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.971
C3XPG2_BRAFL	C3ZHU7_BRAFL	C3XPG2	C3ZHU7	Uncharacterized protein.	Uncharacterized protein.	0.957
C3XPG2_BRAFL	C3ZRU4_BRAFL	C3XPG2	C3ZRU4	Uncharacterized protein.	Uncharacterized protein.	0.968