(15 nodes) Mixed, incl. Ciliary transition fiber, and Centrosomal protein CEP162-like network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XTF2_BRAFL	Uncharacterized protein. (832 aa)
	C3XTF4_BRAFL	C2 domain-containing protein. (371 aa)
	C3XZA8_BRAFL	WW domain-containing protein. (109 aa)
	C3Y7J5_BRAFL	Uncharacterized protein. (203 aa)
	C3YBH5_BRAFL	Uncharacterized protein. (193 aa)
	C3YBH6_BRAFL	Uncharacterized protein. (990 aa)
	C3YFQ9_BRAFL	Uncharacterized protein. (197 aa)
	C3YS96_BRAFL	LisH domain-containing protein. (353 aa)
	C3YXU5_BRAFL	Uncharacterized protein. (285 aa)
	C3YZW1_BRAFL	Uncharacterized protein. (107 aa)
	C3ZDB8_BRAFL	Uncharacterized protein. (165 aa)
	C3ZJG8_BRAFL	Uncharacterized protein. (146 aa)
	C3ZJG9_BRAFL	Uncharacterized protein. (169 aa)
	C3ZRL6_BRAFL	DUF4378 domain-containing protein. (3325 aa)
	C3ZRU3_BRAFL	Uncharacterized protein. (772 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTF2_BRAFL	C3XTF4_BRAFL	C3XTF2	C3XTF4	Uncharacterized protein.	C2 domain-containing protein.	0.884
C3XTF4_BRAFL	C3XTF2_BRAFL	C3XTF4	C3XTF2	C2 domain-containing protein.	Uncharacterized protein.	0.884
C3XZA8_BRAFL	C3YS96_BRAFL	C3XZA8	C3YS96	WW domain-containing protein.	LisH domain-containing protein.	0.406
C3XZA8_BRAFL	C3YZW1_BRAFL	C3XZA8	C3YZW1	WW domain-containing protein.	Uncharacterized protein.	0.658
C3XZA8_BRAFL	C3ZRU3_BRAFL	C3XZA8	C3ZRU3	WW domain-containing protein.	Uncharacterized protein.	0.538
C3Y7J5_BRAFL	C3YXU5_BRAFL	C3Y7J5	C3YXU5	Uncharacterized protein.	Uncharacterized protein.	0.454
C3Y7J5_BRAFL	C3ZDB8_BRAFL	C3Y7J5	C3ZDB8	Uncharacterized protein.	Uncharacterized protein.	0.712
C3Y7J5_BRAFL	C3ZRL6_BRAFL	C3Y7J5	C3ZRL6	Uncharacterized protein.	DUF4378 domain-containing protein.	0.464
C3Y7J5_BRAFL	C3ZRU3_BRAFL	C3Y7J5	C3ZRU3	Uncharacterized protein.	Uncharacterized protein.	0.486
C3YFQ9_BRAFL	C3YS96_BRAFL	C3YFQ9	C3YS96	Uncharacterized protein.	LisH domain-containing protein.	0.529
C3YS96_BRAFL	C3XZA8_BRAFL	C3YS96	C3XZA8	LisH domain-containing protein.	WW domain-containing protein.	0.406
C3YS96_BRAFL	C3YFQ9_BRAFL	C3YS96	C3YFQ9	LisH domain-containing protein.	Uncharacterized protein.	0.529
C3YS96_BRAFL	C3YZW1_BRAFL	C3YS96	C3YZW1	LisH domain-containing protein.	Uncharacterized protein.	0.502
C3YXU5_BRAFL	C3Y7J5_BRAFL	C3YXU5	C3Y7J5	Uncharacterized protein.	Uncharacterized protein.	0.454
C3YXU5_BRAFL	C3ZDB8_BRAFL	C3YXU5	C3ZDB8	Uncharacterized protein.	Uncharacterized protein.	0.606
C3YXU5_BRAFL	C3ZRL6_BRAFL	C3YXU5	C3ZRL6	Uncharacterized protein.	DUF4378 domain-containing protein.	0.897
C3YZW1_BRAFL	C3XZA8_BRAFL	C3YZW1	C3XZA8	Uncharacterized protein.	WW domain-containing protein.	0.658
C3YZW1_BRAFL	C3YS96_BRAFL	C3YZW1	C3YS96	Uncharacterized protein.	LisH domain-containing protein.	0.502
C3YZW1_BRAFL	C3ZDB8_BRAFL	C3YZW1	C3ZDB8	Uncharacterized protein.	Uncharacterized protein.	0.523
C3YZW1_BRAFL	C3ZRL6_BRAFL	C3YZW1	C3ZRL6	Uncharacterized protein.	DUF4378 domain-containing protein.	0.402