(5 nodes) Spectrin, and Spectrin binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQZ8_BRAFL	Spectrin beta chain; Belongs to the spectrin family. (2357 aa)
	C3Y0N1_BRAFL	Uncharacterized protein. (5098 aa)
	C3YVA8_BRAFL	Uncharacterized protein. (477 aa)
	C3Z7N6_BRAFL	Uncharacterized protein. (223 aa)
	C3ZBY6_BRAFL	Uncharacterized protein. (229 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQZ8_BRAFL	C3YVA8_BRAFL	C3XQZ8	C3YVA8	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.489
C3XQZ8_BRAFL	C3Z7N6_BRAFL	C3XQZ8	C3Z7N6	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.539
C3XQZ8_BRAFL	C3ZBY6_BRAFL	C3XQZ8	C3ZBY6	Spectrin beta chain; Belongs to the spectrin family.	Uncharacterized protein.	0.539
C3Y0N1_BRAFL	C3YVA8_BRAFL	C3Y0N1	C3YVA8	Uncharacterized protein.	Uncharacterized protein.	0.489
C3Y0N1_BRAFL	C3Z7N6_BRAFL	C3Y0N1	C3Z7N6	Uncharacterized protein.	Uncharacterized protein.	0.539
C3Y0N1_BRAFL	C3ZBY6_BRAFL	C3Y0N1	C3ZBY6	Uncharacterized protein.	Uncharacterized protein.	0.539
C3YVA8_BRAFL	C3XQZ8_BRAFL	C3YVA8	C3XQZ8	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.489
C3YVA8_BRAFL	C3Y0N1_BRAFL	C3YVA8	C3Y0N1	Uncharacterized protein.	Uncharacterized protein.	0.489
C3Z7N6_BRAFL	C3XQZ8_BRAFL	C3Z7N6	C3XQZ8	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.539
C3Z7N6_BRAFL	C3Y0N1_BRAFL	C3Z7N6	C3Y0N1	Uncharacterized protein.	Uncharacterized protein.	0.539
C3ZBY6_BRAFL	C3XQZ8_BRAFL	C3ZBY6	C3XQZ8	Uncharacterized protein.	Spectrin beta chain; Belongs to the spectrin family.	0.539
C3ZBY6_BRAFL	C3Y0N1_BRAFL	C3ZBY6	C3Y0N1	Uncharacterized protein.	Uncharacterized protein.	0.539