(17 nodes) Mixed, incl. Chitin synthase, and Kinesin binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XWH0_BRAFL	Uncharacterized protein. (1333 aa)
	C3Y0D3_BRAFL	Uncharacterized protein. (592 aa)
	C3Y944_BRAFL	TPR_REGION domain-containing protein. (582 aa)
	C3YI24_BRAFL	TPR_REGION domain-containing protein. (550 aa)
	C3YI88_BRAFL	TPR_REGION domain-containing protein. (655 aa)
	C3YLQ8_BRAFL	DED domain-containing protein. (1125 aa)
	C3YME1_BRAFL	TPR_REGION domain-containing protein. (774 aa)
	C3YTE7_BRAFL	TPR_REGION domain-containing protein. (387 aa)
	C3YX98_BRAFL	TPR_REGION domain-containing protein. (782 aa)
	C3ZC81_BRAFL	Uncharacterized protein. (233 aa)
	C3ZFZ5_BRAFL	Uncharacterized protein. (943 aa)
	C3ZHF2_BRAFL	Uncharacterized protein. (557 aa)
	C3ZHS5_BRAFL	TPR_REGION domain-containing protein. (714 aa)
	C3ZKT4_BRAFL	Uncharacterized protein. (1752 aa)
	DVL3	CA domain-containing protein. (1290 aa)
	C3ZWY6_BRAFL	Uncharacterized protein. (564 aa)
	C4A0L0_BRAFL	Uncharacterized protein. (418 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XWH0_BRAFL	C3Y0D3_BRAFL	C3XWH0	C3Y0D3	Uncharacterized protein.	Uncharacterized protein.	0.928
C3XWH0_BRAFL	C3ZC81_BRAFL	C3XWH0	C3ZC81	Uncharacterized protein.	Uncharacterized protein.	0.664
C3Y0D3_BRAFL	C3XWH0_BRAFL	C3Y0D3	C3XWH0	Uncharacterized protein.	Uncharacterized protein.	0.928
C3Y0D3_BRAFL	C3ZC81_BRAFL	C3Y0D3	C3ZC81	Uncharacterized protein.	Uncharacterized protein.	0.820
C3Y0D3_BRAFL	DVL3	C3Y0D3	C3ZLS9	Uncharacterized protein.	CA domain-containing protein.	0.873
C3ZC81_BRAFL	C3XWH0_BRAFL	C3ZC81	C3XWH0	Uncharacterized protein.	Uncharacterized protein.	0.664
C3ZC81_BRAFL	C3Y0D3_BRAFL	C3ZC81	C3Y0D3	Uncharacterized protein.	Uncharacterized protein.	0.820
DVL3	C3Y0D3_BRAFL	C3ZLS9	C3Y0D3	CA domain-containing protein.	Uncharacterized protein.	0.873