(22 nodes) Ligand binding domain of hormone receptors, and NR1H2 and NR1H3-mediated signaling network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRB0_BRAFL	Uncharacterized protein. (399 aa)
	C3XV35_BRAFL	Uncharacterized protein. (3119 aa)
	C3Y183_BRAFL	NR LBD domain-containing protein. (414 aa)
	C3Y2V8_BRAFL	Uncharacterized protein. (427 aa)
	C3Y3W0_BRAFL	Uncharacterized protein. (678 aa)
	C3Y4X3_BRAFL	Uncharacterized protein. (343 aa)
	C3YA14_BRAFL	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family. (601 aa)
	C3YIU8_BRAFL	Uncharacterized protein. (848 aa)
	C3YM52_BRAFL	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily. (431 aa)
	C3YQS8_BRAFL	ANK_REP_REGION domain-containing protein. (152 aa)
	C3YTK7_BRAFL	ABC transporter domain-containing protein. (1747 aa)
	C3YX32_BRAFL	NR LBD domain-containing protein. (198 aa)
	C3YYK6_BRAFL	Uncharacterized protein. (581 aa)
	C3YYK7_BRAFL	Uncharacterized protein. (566 aa)
	C3YYX7_BRAFL	Uncharacterized protein. (419 aa)
	C3Z508_BRAFL	Uncharacterized protein. (445 aa)
	C3Z6H1_BRAFL	Uncharacterized protein. (491 aa)
	C3Z6H4_BRAFL	Uncharacterized protein. (320 aa)
	C3ZAI3_BRAFL	Nrf1_DNA-bind domain-containing protein. (426 aa)
	C3ZEP1_BRAFL	Uncharacterized protein. (499 aa)
	C3ZPQ2_BRAFL	Uncharacterized protein. (343 aa)
	C3ZXI3_BRAFL	TAZ-type domain-containing protein. (131 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRB0_BRAFL	C3XV35_BRAFL	C3XRB0	C3XV35	Uncharacterized protein.	Uncharacterized protein.	0.799
C3XRB0_BRAFL	C3Y3W0_BRAFL	C3XRB0	C3Y3W0	Uncharacterized protein.	Uncharacterized protein.	0.942
C3XRB0_BRAFL	C3Y4X3_BRAFL	C3XRB0	C3Y4X3	Uncharacterized protein.	Uncharacterized protein.	0.594
C3XRB0_BRAFL	C3YX32_BRAFL	C3XRB0	C3YX32	Uncharacterized protein.	NR LBD domain-containing protein.	0.489
C3XV35_BRAFL	C3XRB0_BRAFL	C3XV35	C3XRB0	Uncharacterized protein.	Uncharacterized protein.	0.799
C3XV35_BRAFL	C3Y183_BRAFL	C3XV35	C3Y183	Uncharacterized protein.	NR LBD domain-containing protein.	0.682
C3XV35_BRAFL	C3Y2V8_BRAFL	C3XV35	C3Y2V8	Uncharacterized protein.	Uncharacterized protein.	0.974
C3XV35_BRAFL	C3Y4X3_BRAFL	C3XV35	C3Y4X3	Uncharacterized protein.	Uncharacterized protein.	0.750
C3XV35_BRAFL	C3YA14_BRAFL	C3XV35	C3YA14	Uncharacterized protein.	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. Protein arginine N-methyltransferase family.	0.660
C3XV35_BRAFL	C3YIU8_BRAFL	C3XV35	C3YIU8	Uncharacterized protein.	Uncharacterized protein.	0.701
C3XV35_BRAFL	C3YM52_BRAFL	C3XV35	C3YM52	Uncharacterized protein.	Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.	0.983
C3XV35_BRAFL	C3YQS8_BRAFL	C3XV35	C3YQS8	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.546
C3XV35_BRAFL	C3YX32_BRAFL	C3XV35	C3YX32	Uncharacterized protein.	NR LBD domain-containing protein.	0.713
C3XV35_BRAFL	C3YYK6_BRAFL	C3XV35	C3YYK6	Uncharacterized protein.	Uncharacterized protein.	0.838
C3XV35_BRAFL	C3YYK7_BRAFL	C3XV35	C3YYK7	Uncharacterized protein.	Uncharacterized protein.	0.958
C3XV35_BRAFL	C3YYX7_BRAFL	C3XV35	C3YYX7	Uncharacterized protein.	Uncharacterized protein.	0.798
C3XV35_BRAFL	C3Z508_BRAFL	C3XV35	C3Z508	Uncharacterized protein.	Uncharacterized protein.	0.684
C3XV35_BRAFL	C3Z6H1_BRAFL	C3XV35	C3Z6H1	Uncharacterized protein.	Uncharacterized protein.	0.696
C3XV35_BRAFL	C3Z6H4_BRAFL	C3XV35	C3Z6H4	Uncharacterized protein.	Uncharacterized protein.	0.696
C3XV35_BRAFL	C3ZEP1_BRAFL	C3XV35	C3ZEP1	Uncharacterized protein.	Uncharacterized protein.	0.988