(19 nodes) Mixed, incl. RFX-like DNA-binding protein, and Inactivation of X chromosome by heterochromatin assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRL4_BRAFL	NB-ARC domain-containing protein. (1342 aa)
	C3XX64_BRAFL	RFXA_RFXANK_bdg domain-containing protein. (198 aa)
	C3Y542_BRAFL	DUF4203 domain-containing protein. (513 aa)
	C3Y5R3_BRAFL	Uncharacterized protein. (3269 aa)
	C3YGA7_BRAFL	Uncharacterized protein. (1277 aa)
	C3YGS5_BRAFL	ANK_REP_REGION domain-containing protein. (203 aa)
	C3YI84_BRAFL	RFX-type winged-helix domain-containing protein. (153 aa)
	C3YI85_BRAFL	Uncharacterized protein. (596 aa)
	C3YKI8_BRAFL	RFX-type winged-helix domain-containing protein. (197 aa)
	C3YWX0_BRAFL	Uncharacterized protein. (996 aa)
	C3YWX1_BRAFL	DUF3535 domain-containing protein. (1135 aa)
	C3Z272_BRAFL	Uncharacterized protein. (725 aa)
	C3Z273_BRAFL	SMC hinge domain-containing protein. (1148 aa)
	C3ZFY4_BRAFL	CBFD_NFYB_HMF domain-containing protein. (173 aa)
	C3ZS16_BRAFL	SMC hinge domain-containing protein. (1932 aa)
	C3ZTN8_BRAFL	Uncharacterized protein. (957 aa)
	C3ZWA8_BRAFL	Uncharacterized protein. (550 aa)
	C4A045_BRAFL	Uncharacterized protein. (344 aa)
	C4A047_BRAFL	Uncharacterized protein. (260 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRL4_BRAFL	C3YGA7_BRAFL	C3XRL4	C3YGA7	NB-ARC domain-containing protein.	Uncharacterized protein.	0.659
C3XRL4_BRAFL	C3YWX0_BRAFL	C3XRL4	C3YWX0	NB-ARC domain-containing protein.	Uncharacterized protein.	0.852
C3XRL4_BRAFL	C3YWX1_BRAFL	C3XRL4	C3YWX1	NB-ARC domain-containing protein.	DUF3535 domain-containing protein.	0.852
C3XRL4_BRAFL	C3ZFY4_BRAFL	C3XRL4	C3ZFY4	NB-ARC domain-containing protein.	CBFD_NFYB_HMF domain-containing protein.	0.996
C3XX64_BRAFL	C3YGS5_BRAFL	C3XX64	C3YGS5	RFXA_RFXANK_bdg domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.794
C3XX64_BRAFL	C3YKI8_BRAFL	C3XX64	C3YKI8	RFXA_RFXANK_bdg domain-containing protein.	RFX-type winged-helix domain-containing protein.	0.576
C3Y542_BRAFL	C3YKI8_BRAFL	C3Y542	C3YKI8	DUF4203 domain-containing protein.	RFX-type winged-helix domain-containing protein.	0.522
C3YGA7_BRAFL	C3XRL4_BRAFL	C3YGA7	C3XRL4	Uncharacterized protein.	NB-ARC domain-containing protein.	0.659
C3YGA7_BRAFL	C3YWX1_BRAFL	C3YGA7	C3YWX1	Uncharacterized protein.	DUF3535 domain-containing protein.	0.631
C3YGA7_BRAFL	C3ZFY4_BRAFL	C3YGA7	C3ZFY4	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.674
C3YGS5_BRAFL	C3XX64_BRAFL	C3YGS5	C3XX64	ANK_REP_REGION domain-containing protein.	RFXA_RFXANK_bdg domain-containing protein.	0.794
C3YI84_BRAFL	C3YI85_BRAFL	C3YI84	C3YI85	RFX-type winged-helix domain-containing protein.	Uncharacterized protein.	0.923
C3YI85_BRAFL	C3YI84_BRAFL	C3YI85	C3YI84	Uncharacterized protein.	RFX-type winged-helix domain-containing protein.	0.923
C3YKI8_BRAFL	C3XX64_BRAFL	C3YKI8	C3XX64	RFX-type winged-helix domain-containing protein.	RFXA_RFXANK_bdg domain-containing protein.	0.576
C3YKI8_BRAFL	C3Y542_BRAFL	C3YKI8	C3Y542	RFX-type winged-helix domain-containing protein.	DUF4203 domain-containing protein.	0.522
C3YWX0_BRAFL	C3XRL4_BRAFL	C3YWX0	C3XRL4	Uncharacterized protein.	NB-ARC domain-containing protein.	0.852
C3YWX0_BRAFL	C3YWX1_BRAFL	C3YWX0	C3YWX1	Uncharacterized protein.	DUF3535 domain-containing protein.	0.900
C3YWX0_BRAFL	C3ZFY4_BRAFL	C3YWX0	C3ZFY4	Uncharacterized protein.	CBFD_NFYB_HMF domain-containing protein.	0.854
C3YWX1_BRAFL	C3XRL4_BRAFL	C3YWX1	C3XRL4	DUF3535 domain-containing protein.	NB-ARC domain-containing protein.	0.852
C3YWX1_BRAFL	C3YGA7_BRAFL	C3YWX1	C3YGA7	DUF3535 domain-containing protein.	Uncharacterized protein.	0.631