(10 nodes) BLOC complex network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y5V4_BRAFL	Uncharacterized protein. (686 aa)
	C3YML7_BRAFL	Uncharacterized protein. (155 aa)
	C3YTN9_BRAFL	Uncharacterized protein. (128 aa)
	C3Z2B8_BRAFL	Uncharacterized protein. (836 aa)
	C3Z6E4_BRAFL	Uncharacterized protein. (1203 aa)
	C3Z8L6_BRAFL	Uncharacterized protein. (126 aa)
	C3ZRS7_BRAFL	Uncharacterized protein. (159 aa)
	C3ZWH1_BRAFL	Uncharacterized protein. (99 aa)
	C3ZXB4_BRAFL	Uncharacterized protein. (234 aa)
	C4A096_BRAFL	Uncharacterized protein. (200 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y5V4_BRAFL	C3YML7_BRAFL	C3Y5V4	C3YML7	Uncharacterized protein.	Uncharacterized protein.	0.558
C3Y5V4_BRAFL	C3YTN9_BRAFL	C3Y5V4	C3YTN9	Uncharacterized protein.	Uncharacterized protein.	0.552
C3Y5V4_BRAFL	C3Z2B8_BRAFL	C3Y5V4	C3Z2B8	Uncharacterized protein.	Uncharacterized protein.	0.762
C3Y5V4_BRAFL	C3Z6E4_BRAFL	C3Y5V4	C3Z6E4	Uncharacterized protein.	Uncharacterized protein.	0.969
C3Y5V4_BRAFL	C3Z8L6_BRAFL	C3Y5V4	C3Z8L6	Uncharacterized protein.	Uncharacterized protein.	0.590
C3Y5V4_BRAFL	C3ZRS7_BRAFL	C3Y5V4	C3ZRS7	Uncharacterized protein.	Uncharacterized protein.	0.572
C3Y5V4_BRAFL	C3ZWH1_BRAFL	C3Y5V4	C3ZWH1	Uncharacterized protein.	Uncharacterized protein.	0.567
C3Y5V4_BRAFL	C3ZXB4_BRAFL	C3Y5V4	C3ZXB4	Uncharacterized protein.	Uncharacterized protein.	0.576
C3Y5V4_BRAFL	C4A096_BRAFL	C3Y5V4	C4A096	Uncharacterized protein.	Uncharacterized protein.	0.576
C3YML7_BRAFL	C3Y5V4_BRAFL	C3YML7	C3Y5V4	Uncharacterized protein.	Uncharacterized protein.	0.558
C3YML7_BRAFL	C3YTN9_BRAFL	C3YML7	C3YTN9	Uncharacterized protein.	Uncharacterized protein.	0.805
C3YML7_BRAFL	C3Z2B8_BRAFL	C3YML7	C3Z2B8	Uncharacterized protein.	Uncharacterized protein.	0.668
C3YML7_BRAFL	C3Z6E4_BRAFL	C3YML7	C3Z6E4	Uncharacterized protein.	Uncharacterized protein.	0.587
C3YML7_BRAFL	C3Z8L6_BRAFL	C3YML7	C3Z8L6	Uncharacterized protein.	Uncharacterized protein.	0.862
C3YML7_BRAFL	C3ZRS7_BRAFL	C3YML7	C3ZRS7	Uncharacterized protein.	Uncharacterized protein.	0.802
C3YML7_BRAFL	C3ZWH1_BRAFL	C3YML7	C3ZWH1	Uncharacterized protein.	Uncharacterized protein.	0.817
C3YML7_BRAFL	C3ZXB4_BRAFL	C3YML7	C3ZXB4	Uncharacterized protein.	Uncharacterized protein.	0.756
C3YML7_BRAFL	C4A096_BRAFL	C3YML7	C4A096	Uncharacterized protein.	Uncharacterized protein.	0.756
C3YTN9_BRAFL	C3Y5V4_BRAFL	C3YTN9	C3Y5V4	Uncharacterized protein.	Uncharacterized protein.	0.552
C3YTN9_BRAFL	C3YML7_BRAFL	C3YTN9	C3YML7	Uncharacterized protein.	Uncharacterized protein.	0.805