(12 nodes) Synaptonemal complex, and Leucine zipper with capping helix domain network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y7J4_BRAFL	HORMA domain-containing protein. (202 aa)
	C3YFB0_BRAFL	RING-type domain-containing protein. (304 aa)
	C3YI56_BRAFL	Uncharacterized protein. (162 aa)
	C3YI58_BRAFL	TPR_REGION domain-containing protein. (720 aa)
	C3YQ87_BRAFL	Uncharacterized protein. (1290 aa)
	C3YV52_BRAFL	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family. (205 aa)
	C3YX60_BRAFL	Uncharacterized protein. (358 aa)
	C3ZHE3_BRAFL	Uncharacterized protein. (212 aa)
	C3ZI53_BRAFL	Cor1 domain-containing protein. (1524 aa)
	C3ZJ92_BRAFL	Uncharacterized protein. (185 aa)
	C3ZM03_BRAFL	Cor1 domain-containing protein. (242 aa)
	C3ZRQ6_BRAFL	RING-type domain-containing protein. (178 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y7J4_BRAFL	C3YFB0_BRAFL	C3Y7J4	C3YFB0	HORMA domain-containing protein.	RING-type domain-containing protein.	0.515
C3Y7J4_BRAFL	C3YI56_BRAFL	C3Y7J4	C3YI56	HORMA domain-containing protein.	Uncharacterized protein.	0.469
C3Y7J4_BRAFL	C3YI58_BRAFL	C3Y7J4	C3YI58	HORMA domain-containing protein.	TPR_REGION domain-containing protein.	0.469
C3Y7J4_BRAFL	C3YQ87_BRAFL	C3Y7J4	C3YQ87	HORMA domain-containing protein.	Uncharacterized protein.	0.531
C3Y7J4_BRAFL	C3YV52_BRAFL	C3Y7J4	C3YV52	HORMA domain-containing protein.	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	0.706
C3Y7J4_BRAFL	C3ZHE3_BRAFL	C3Y7J4	C3ZHE3	HORMA domain-containing protein.	Uncharacterized protein.	0.538
C3Y7J4_BRAFL	C3ZJ92_BRAFL	C3Y7J4	C3ZJ92	HORMA domain-containing protein.	Uncharacterized protein.	0.538
C3Y7J4_BRAFL	C3ZM03_BRAFL	C3Y7J4	C3ZM03	HORMA domain-containing protein.	Cor1 domain-containing protein.	0.554
C3Y7J4_BRAFL	C3ZRQ6_BRAFL	C3Y7J4	C3ZRQ6	HORMA domain-containing protein.	RING-type domain-containing protein.	0.510
C3YFB0_BRAFL	C3Y7J4_BRAFL	C3YFB0	C3Y7J4	RING-type domain-containing protein.	HORMA domain-containing protein.	0.515
C3YFB0_BRAFL	C3YI56_BRAFL	C3YFB0	C3YI56	RING-type domain-containing protein.	Uncharacterized protein.	0.478
C3YFB0_BRAFL	C3YI58_BRAFL	C3YFB0	C3YI58	RING-type domain-containing protein.	TPR_REGION domain-containing protein.	0.478
C3YI56_BRAFL	C3Y7J4_BRAFL	C3YI56	C3Y7J4	Uncharacterized protein.	HORMA domain-containing protein.	0.469
C3YI56_BRAFL	C3YFB0_BRAFL	C3YI56	C3YFB0	Uncharacterized protein.	RING-type domain-containing protein.	0.478
C3YI56_BRAFL	C3YI58_BRAFL	C3YI56	C3YI58	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.458
C3YI58_BRAFL	C3Y7J4_BRAFL	C3YI58	C3Y7J4	TPR_REGION domain-containing protein.	HORMA domain-containing protein.	0.469
C3YI58_BRAFL	C3YFB0_BRAFL	C3YI58	C3YFB0	TPR_REGION domain-containing protein.	RING-type domain-containing protein.	0.478
C3YI58_BRAFL	C3YI56_BRAFL	C3YI58	C3YI56	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.458
C3YQ87_BRAFL	C3Y7J4_BRAFL	C3YQ87	C3Y7J4	Uncharacterized protein.	HORMA domain-containing protein.	0.531
C3YV52_BRAFL	C3Y7J4_BRAFL	C3YV52	C3Y7J4	Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.	HORMA domain-containing protein.	0.706