(5 nodes) Telomere tethering at nuclear periphery, and Nuclear membrane protein complex network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XRB2_BRAFL	Uncharacterized protein. (8372 aa)
	C3XUG5_BRAFL	Uncharacterized protein. (1305 aa)
	C3Y953_BRAFL	SUN domain-containing protein. (1111 aa)
	C3YA66_BRAFL	Uncharacterized protein. (348 aa)
	C3ZR70_BRAFL	Uncharacterized protein. (379 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XRB2_BRAFL	C3XUG5_BRAFL	C3XRB2	C3XUG5	Uncharacterized protein.	Uncharacterized protein.	0.523
C3XRB2_BRAFL	C3Y953_BRAFL	C3XRB2	C3Y953	Uncharacterized protein.	SUN domain-containing protein.	0.902
C3XUG5_BRAFL	C3XRB2_BRAFL	C3XUG5	C3XRB2	Uncharacterized protein.	Uncharacterized protein.	0.523
C3Y953_BRAFL	C3XRB2_BRAFL	C3Y953	C3XRB2	SUN domain-containing protein.	Uncharacterized protein.	0.902
C3Y953_BRAFL	C3YA66_BRAFL	C3Y953	C3YA66	SUN domain-containing protein.	Uncharacterized protein.	0.508
C3Y953_BRAFL	C3ZR70_BRAFL	C3Y953	C3ZR70	SUN domain-containing protein.	Uncharacterized protein.	0.589
C3YA66_BRAFL	C3Y953_BRAFL	C3YA66	C3Y953	Uncharacterized protein.	SUN domain-containing protein.	0.508
C3YA66_BRAFL	C3ZR70_BRAFL	C3YA66	C3ZR70	Uncharacterized protein.	Uncharacterized protein.	0.711
C3ZR70_BRAFL	C3Y953_BRAFL	C3ZR70	C3Y953	Uncharacterized protein.	SUN domain-containing protein.	0.589
C3ZR70_BRAFL	C3YA66_BRAFL	C3ZR70	C3YA66	Uncharacterized protein.	Uncharacterized protein.	0.711