(106 nodes) Mixed, incl. Tetraspanin, EC2 domain superfamily, and Oxygen binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQE7_BRAFL	Tetraspanin. (248 aa)
	C3XQF1_BRAFL	Tetraspanin. (262 aa)
	C3XR98_BRAFL	Tetraspanin. (189 aa)
	C3XRB3_BRAFL	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family. (351 aa)
	C3XS12_BRAFL	Uncharacterized protein. (335 aa)
	C3XSA7_BRAFL	Uncharacterized protein. (335 aa)
	C3XU16_BRAFL	Vitellogenin domain-containing protein. (1571 aa)
	C3XXF7_BRAFL	BHLH domain-containing protein. (1047 aa)
	C3XZ74_BRAFL	Uncharacterized protein. (385 aa)
	C3XZG2_BRAFL	ML domain-containing protein. (149 aa)
	C3XZU6_BRAFL	Uncharacterized protein. (213 aa)
	C3XZV0_BRAFL	Uncharacterized protein. (887 aa)
	C3Y041_BRAFL	Uncharacterized protein. (701 aa)
	lGb14	Globin; Belongs to the globin family. (236 aa)
	C3Y0B0_BRAFL	ML domain-containing protein. (150 aa)
	C3Y0B1_BRAFL	ML domain-containing protein. (138 aa)
	C3Y0P3_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (181 aa)
	C3Y3C1_BRAFL	Uncharacterized protein; Belongs to the CD36 family. (480 aa)
	C3Y3V3_BRAFL	Tetraspanin. (487 aa)
	C3Y474_BRAFL	Uncharacterized protein. (631 aa)
	C3Y502_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (165 aa)
	C3Y525_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (219 aa)
	C3Y526_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (253 aa)
	C3Y5Y6_BRAFL	Tetraspanin. (509 aa)
	C3Y5Z1_BRAFL	Tetraspanin. (253 aa)
	C3Y5Z2_BRAFL	Tetraspanin. (280 aa)
	C3Y5Z8_BRAFL	Tetraspanin. (305 aa)
	C3Y650_BRAFL	Tetraspanin. (158 aa)
	C3Y653_BRAFL	Tetraspanin. (194 aa)
	C3Y654_BRAFL	Tetraspanin. (243 aa)
	C3Y656_BRAFL	Tetraspanin. (247 aa)
	C3Y657_BRAFL	Tetraspanin. (247 aa)
	C3Y659_BRAFL	Tetraspanin. (188 aa)
	C3Y664_BRAFL	Tetraspanin. (255 aa)
	C3Y665_BRAFL	Tetraspanin. (223 aa)
	C3Y675_BRAFL	Tetraspanin. (264 aa)
	C3Y909_BRAFL	Deacetylase sirtuin-type domain-containing protein. (399 aa)
	C3YC59_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (187 aa)
	C3YC60_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (187 aa)
	C3YC61_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (188 aa)
	C3YDP7_BRAFL	SAP domain-containing protein. (348 aa)
	C3YE68_BRAFL	LRRNT domain-containing protein. (132 aa)
	C3YEA7_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (151 aa)
	C3YEF2_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (127 aa)
	C3YEZ7_BRAFL	Tetraspanin. (303 aa)
	C3YEZ8_BRAFL	Tetraspanin. (304 aa)
	C3YEZ9_BRAFL	Tetraspanin. (396 aa)
	C3YFG4_BRAFL	Tetraspanin. (327 aa)
	C3YFZ2_BRAFL	BZIP domain-containing protein. (671 aa)
	C3YG07_BRAFL	Tetraspanin. (270 aa)
	C3YK57_BRAFL	Tetraspanin. (258 aa)
	C3YL87_BRAFL	Uncharacterized protein. (135 aa)
	C3YPX1_BRAFL	TORC_N domain-containing protein. (123 aa)
	C3YSB7_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (178 aa)
	C3YSB9_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (185 aa)
	C3YSJ1_BRAFL	Uncharacterized protein. (1454 aa)
	C3YU08_BRAFL	BZIP domain-containing protein. (652 aa)
	C3YUC7_BRAFL	Uncharacterized protein. (1139 aa)
	C3YUF0_BRAFL	Lipocln_cytosolic_FA-bd_dom domain-containing protein; Belongs to the calycin superfamily. Lipocalin family. (219 aa)
	C3YUH1_BRAFL	Uncharacterized protein. (399 aa)
	C3YVH5_BRAFL	Uncharacterized protein. (1824 aa)
	C3YVJ2_BRAFL	Uncharacterized protein. (543 aa)
	RdhF	SSD domain-containing protein. (764 aa)
	C3YW78_BRAFL	Carn_acyltransf domain-containing protein. (223 aa)
	C3YX46_BRAFL	Calpain catalytic domain-containing protein; Belongs to the peptidase C2 family. (218 aa)
	C3YX48_BRAFL	Uncharacterized protein. (1323 aa)
	C3YZ50_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (188 aa)
	C3YZ94_BRAFL	Aa_trans domain-containing protein. (456 aa)
	C3Z0G1_BRAFL	Uncharacterized protein. (318 aa)
	C3Z0K2_BRAFL	Uncharacterized protein. (664 aa)
	C3Z150_BRAFL	Uncharacterized protein. (183 aa)
	C3Z2J1_BRAFL	Uncharacterized protein. (334 aa)
	C3Z2J4_BRAFL	Uncharacterized protein. (364 aa)
	C3Z320_BRAFL	Carn_acyltransf domain-containing protein. (431 aa)
	C3Z5A2_BRAFL	Vitellogenin domain-containing protein. (871 aa)
	C3Z5D6_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (142 aa)
	C3Z5U7_BRAFL	Uncharacterized protein. (648 aa)
	C3Z6J3_BRAFL	Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family. (340 aa)
	C3Z6N3_BRAFL	Protein disulfide-isomerase. (486 aa)
	C3Z8V1_BRAFL	Uncharacterized protein. (316 aa)
	C3Z9M6_BRAFL	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family. (633 aa)
	C3Z9M9_BRAFL	acidPPc domain-containing protein. (361 aa)
	C3Z9V9_BRAFL	Uncharacterized protein. (348 aa)
	C3ZAI6_BRAFL	ATPase_AAA_core domain-containing protein. (851 aa)
	C3ZB31_BRAFL	Uncharacterized protein. (1052 aa)
	C3ZBM1_BRAFL	Peptidase_S8 domain-containing protein. (1034 aa)
	C3ZFA5_BRAFL	Uncharacterized protein. (417 aa)
	C3ZH47_BRAFL	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family. (471 aa)
	C3ZI92_BRAFL	Carn_acyltransf domain-containing protein. (606 aa)
	C3ZJ15_BRAFL	Uncharacterized protein. (3569 aa)
	C3ZJ90_BRAFL	Vitellogenin domain-containing protein. (800 aa)
	C3ZJ91_BRAFL	Vitellogenin domain-containing protein. (1042 aa)
	C3ZJ93_BRAFL	Uncharacterized protein. (956 aa)
	C3ZJ94_BRAFL	Uncharacterized protein. (200 aa)
	C3ZKB4_BRAFL	Uncharacterized protein; Belongs to the CD36 family. (445 aa)
	C3ZKB5_BRAFL	Uncharacterized protein; Belongs to the CD36 family. (229 aa)
	C3ZKB6_BRAFL	Uncharacterized protein; Belongs to the CD36 family. (159 aa)
	C3ZQH0_BRAFL	GLOBIN domain-containing protein; Belongs to the globin family. (187 aa)
	C3ZRT0_BRAFL	Uncharacterized protein. (367 aa)
	C3ZSN0_BRAFL	SSD domain-containing protein. (1368 aa)
	C3ZT79_BRAFL	Tetraspanin. (251 aa)
	C3ZW15_BRAFL	Uncharacterized protein. (246 aa)
	C3ZW16_BRAFL	Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family. (551 aa)
	C3ZXG2_BRAFL	Abhydro_lipase domain-containing protein. (380 aa)
	C3ZZN0_BRAFL	Methyltransf_11 domain-containing protein. (442 aa)
	C4A0V1_BRAFL	Uncharacterized protein. (93 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XQF1_BRAFL	C3YFG4_BRAFL	C3XQF1	C3YFG4	Tetraspanin.	Tetraspanin.	0.555
C3XRB3_BRAFL	C3YW78_BRAFL	C3XRB3	C3YW78	Carn_acyltransf domain-containing protein; Belongs to the carnitine/choline acetyltransferase family.	Carn_acyltransf domain-containing protein.	0.469
C3XU16_BRAFL	C3YUC7_BRAFL	C3XU16	C3YUC7	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.444
C3XU16_BRAFL	C3Z5A2_BRAFL	C3XU16	C3Z5A2	Vitellogenin domain-containing protein.	Vitellogenin domain-containing protein.	0.803
C3XU16_BRAFL	C3Z9V9_BRAFL	C3XU16	C3Z9V9	Vitellogenin domain-containing protein.	Uncharacterized protein.	0.444
C3XXF7_BRAFL	C3XZU6_BRAFL	C3XXF7	C3XZU6	BHLH domain-containing protein.	Uncharacterized protein.	0.822
C3XXF7_BRAFL	C3YSJ1_BRAFL	C3XXF7	C3YSJ1	BHLH domain-containing protein.	Uncharacterized protein.	0.987
C3XXF7_BRAFL	C3YU08_BRAFL	C3XXF7	C3YU08	BHLH domain-containing protein.	BZIP domain-containing protein.	0.473
C3XXF7_BRAFL	C3Z5A2_BRAFL	C3XXF7	C3Z5A2	BHLH domain-containing protein.	Vitellogenin domain-containing protein.	0.512
C3XXF7_BRAFL	C3Z9M6_BRAFL	C3XXF7	C3Z9M6	BHLH domain-containing protein.	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family.	0.583
C3XXF7_BRAFL	C3ZBM1_BRAFL	C3XXF7	C3ZBM1	BHLH domain-containing protein.	Peptidase_S8 domain-containing protein.	0.787
C3XXF7_BRAFL	C3ZH47_BRAFL	C3XXF7	C3ZH47	BHLH domain-containing protein.	Peptidase_S8 domain-containing protein; Belongs to the peptidase S8 family.	0.583
C3XXF7_BRAFL	C3ZSN0_BRAFL	C3XXF7	C3ZSN0	BHLH domain-containing protein.	SSD domain-containing protein.	0.857
C3XXF7_BRAFL	C3ZW16_BRAFL	C3XXF7	C3ZW16	BHLH domain-containing protein.	Uncharacterized protein; Belongs to the carnitine/choline acetyltransferase family.	0.457
C3XXF7_BRAFL	RdhF	C3XXF7	C3YVT5	BHLH domain-containing protein.	SSD domain-containing protein.	0.822
C3XZ74_BRAFL	C3ZFA5_BRAFL	C3XZ74	C3ZFA5	Uncharacterized protein.	Uncharacterized protein.	0.429
C3XZG2_BRAFL	C3XZU6_BRAFL	C3XZG2	C3XZU6	ML domain-containing protein.	Uncharacterized protein.	0.622
C3XZG2_BRAFL	C3Y0B0_BRAFL	C3XZG2	C3Y0B0	ML domain-containing protein.	ML domain-containing protein.	0.903
C3XZG2_BRAFL	C3YSJ1_BRAFL	C3XZG2	C3YSJ1	ML domain-containing protein.	Uncharacterized protein.	0.622
C3XZG2_BRAFL	C3ZJ94_BRAFL	C3XZG2	C3ZJ94	ML domain-containing protein.	Uncharacterized protein.	0.481