Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
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Neighborhood
Groups of genes that are frequently observed in each other's genomic neighborhood.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
Node Content
empty nodes: proteins of unknown 3D structure
filled nodes: a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
C3Y204_BRAFL
Uncharacterized protein. (596 aa)
C3Y205_BRAFL
Uncharacterized protein. (454 aa)
C3Y9V0_BRAFL
Uncharacterized protein. (840 aa)
C3ZIU4_BRAFL
Uncharacterized protein. (659 aa)
C3ZLU7_BRAFL
Uncharacterized protein. (673 aa)
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739 Other names: Amphioxus floridae, B. floridae, Florida lancelet