(5 nodes) Glucosylceramide metabolic process, and Ceramidase network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y1U1_BRAFL	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid. (268 aa)
	C3YDT5_BRAFL	TLC domain-containing protein. (313 aa)
	C3YQ20_BRAFL	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide. (871 aa)
	C3YV82_BRAFL	DAGKc domain-containing protein. (227 aa)
	C3ZW06_BRAFL	Uncharacterized protein. (391 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y1U1_BRAFL	C3YDT5_BRAFL	C3Y1U1	C3YDT5	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	TLC domain-containing protein.	0.930
C3Y1U1_BRAFL	C3YQ20_BRAFL	C3Y1U1	C3YQ20	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.922
C3Y1U1_BRAFL	C3YV82_BRAFL	C3Y1U1	C3YV82	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	DAGKc domain-containing protein.	0.958
C3Y1U1_BRAFL	C3ZW06_BRAFL	C3Y1U1	C3ZW06	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	Uncharacterized protein.	0.924
C3YDT5_BRAFL	C3Y1U1_BRAFL	C3YDT5	C3Y1U1	TLC domain-containing protein.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.930
C3YDT5_BRAFL	C3YQ20_BRAFL	C3YDT5	C3YQ20	TLC domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.906
C3YDT5_BRAFL	C3YV82_BRAFL	C3YDT5	C3YV82	TLC domain-containing protein.	DAGKc domain-containing protein.	0.940
C3YDT5_BRAFL	C3ZW06_BRAFL	C3YDT5	C3ZW06	TLC domain-containing protein.	Uncharacterized protein.	0.942
C3YQ20_BRAFL	C3Y1U1_BRAFL	C3YQ20	C3Y1U1	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.922
C3YQ20_BRAFL	C3YDT5_BRAFL	C3YQ20	C3YDT5	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	TLC domain-containing protein.	0.906
C3YQ20_BRAFL	C3YV82_BRAFL	C3YQ20	C3YV82	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	DAGKc domain-containing protein.	0.949
C3YQ20_BRAFL	C3ZW06_BRAFL	C3YQ20	C3ZW06	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	Uncharacterized protein.	0.951
C3YV82_BRAFL	C3Y1U1_BRAFL	C3YV82	C3Y1U1	DAGKc domain-containing protein.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.958
C3YV82_BRAFL	C3YDT5_BRAFL	C3YV82	C3YDT5	DAGKc domain-containing protein.	TLC domain-containing protein.	0.940
C3YV82_BRAFL	C3YQ20_BRAFL	C3YV82	C3YQ20	DAGKc domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.949
C3YV82_BRAFL	C3ZW06_BRAFL	C3YV82	C3ZW06	DAGKc domain-containing protein.	Uncharacterized protein.	0.952
C3ZW06_BRAFL	C3Y1U1_BRAFL	C3ZW06	C3Y1U1	Uncharacterized protein.	Alkaline ceramidase; Hydrolyzes the sphingolipid ceramide into sphingosine and free fatty acid.	0.924
C3ZW06_BRAFL	C3YDT5_BRAFL	C3ZW06	C3YDT5	Uncharacterized protein.	TLC domain-containing protein.	0.942
C3ZW06_BRAFL	C3YQ20_BRAFL	C3ZW06	C3YQ20	Uncharacterized protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.951
C3ZW06_BRAFL	C3YV82_BRAFL	C3ZW06	C3YV82	Uncharacterized protein.	DAGKc domain-containing protein.	0.952