(10 nodes) BBSome, and Regulation of protein localization to ciliary membrane network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XU54_BRAFL	Bardet-Biedl syndrome 2 protein homolog. (716 aa)
	C3XXL3_BRAFL	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function. (715 aa)
	C3YBX4_BRAFL	Uncharacterized protein. (340 aa)
	C3YE92_BRAFL	Uncharacterized protein. (702 aa)
	C3YEG9_BRAFL	Uncharacterized protein. (425 aa)
	C3YN59_BRAFL	Uncharacterized protein. (303 aa)
	C3Z2B9_BRAFL	BBS1 domain-containing protein. (540 aa)
	C3Z9M1_BRAFL	BTB domain-containing protein. (626 aa)
	C3ZKQ7_BRAFL	TPR_REGION domain-containing protein. (506 aa)
	C3ZYE3_BRAFL	Uncharacterized protein. (475 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU54_BRAFL	C3XXL3_BRAFL	C3XU54	C3XXL3	Bardet-Biedl syndrome 2 protein homolog.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.995
C3XU54_BRAFL	C3YBX4_BRAFL	C3XU54	C3YBX4	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.947
C3XU54_BRAFL	C3YE92_BRAFL	C3XU54	C3YE92	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.994
C3XU54_BRAFL	C3YEG9_BRAFL	C3XU54	C3YEG9	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.947
C3XU54_BRAFL	C3YN59_BRAFL	C3XU54	C3YN59	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.927
C3XU54_BRAFL	C3Z2B9_BRAFL	C3XU54	C3Z2B9	Bardet-Biedl syndrome 2 protein homolog.	BBS1 domain-containing protein.	0.995
C3XU54_BRAFL	C3Z9M1_BRAFL	C3XU54	C3Z9M1	Bardet-Biedl syndrome 2 protein homolog.	BTB domain-containing protein.	0.891
C3XU54_BRAFL	C3ZKQ7_BRAFL	C3XU54	C3ZKQ7	Bardet-Biedl syndrome 2 protein homolog.	TPR_REGION domain-containing protein.	0.995
C3XU54_BRAFL	C3ZYE3_BRAFL	C3XU54	C3ZYE3	Bardet-Biedl syndrome 2 protein homolog.	Uncharacterized protein.	0.947
C3XXL3_BRAFL	C3XU54_BRAFL	C3XXL3	C3XU54	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Bardet-Biedl syndrome 2 protein homolog.	0.995
C3XXL3_BRAFL	C3YBX4_BRAFL	C3XXL3	C3YBX4	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.946
C3XXL3_BRAFL	C3YE92_BRAFL	C3XXL3	C3YE92	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.993
C3XXL3_BRAFL	C3YEG9_BRAFL	C3XXL3	C3YEG9	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.927
C3XXL3_BRAFL	C3YN59_BRAFL	C3XXL3	C3YN59	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.891
C3XXL3_BRAFL	C3Z2B9_BRAFL	C3XXL3	C3Z2B9	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	BBS1 domain-containing protein.	0.994
C3XXL3_BRAFL	C3Z9M1_BRAFL	C3XXL3	C3Z9M1	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	BTB domain-containing protein.	0.888
C3XXL3_BRAFL	C3ZKQ7_BRAFL	C3XXL3	C3ZKQ7	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	TPR_REGION domain-containing protein.	0.995
C3XXL3_BRAFL	C3ZYE3_BRAFL	C3XXL3	C3ZYE3	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	Uncharacterized protein.	0.927
C3YBX4_BRAFL	C3XU54_BRAFL	C3YBX4	C3XU54	Uncharacterized protein.	Bardet-Biedl syndrome 2 protein homolog.	0.947
C3YBX4_BRAFL	C3XXL3_BRAFL	C3YBX4	C3XXL3	Uncharacterized protein.	Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.	0.946