STRINGSTRING
C3XPP3_BRAFL C3XPP3_BRAFL C3XPX8_BRAFL C3XPX8_BRAFL C3XQ24_BRAFL C3XQ24_BRAFL C3XRA2_BRAFL C3XRA2_BRAFL C3XSA2_BRAFL C3XSA2_BRAFL C3XSK0_BRAFL C3XSK0_BRAFL C3XTJ3_BRAFL C3XTJ3_BRAFL C3XU44_BRAFL C3XU44_BRAFL C3XU45_BRAFL C3XU45_BRAFL C3XU46_BRAFL C3XU46_BRAFL C3XUR8_BRAFL C3XUR8_BRAFL C3XVF6_BRAFL C3XVF6_BRAFL C3XWK5_BRAFL C3XWK5_BRAFL C3XX69_BRAFL C3XX69_BRAFL C3XZ17_BRAFL C3XZ17_BRAFL C3Y0C1_BRAFL C3Y0C1_BRAFL C3Y0H1_BRAFL C3Y0H1_BRAFL C3Y0I0_BRAFL C3Y0I0_BRAFL C3Y1R6_BRAFL C3Y1R6_BRAFL C3Y1V7_BRAFL C3Y1V7_BRAFL C3Y255_BRAFL C3Y255_BRAFL C3Y2A7_BRAFL C3Y2A7_BRAFL C3Y2N3_BRAFL C3Y2N3_BRAFL C3Y3A3_BRAFL C3Y3A3_BRAFL C3Y3C6_BRAFL C3Y3C6_BRAFL C3Y529_BRAFL C3Y529_BRAFL C3Y5M2_BRAFL C3Y5M2_BRAFL C3Y5U9_BRAFL C3Y5U9_BRAFL C3Y645_BRAFL C3Y645_BRAFL C3Y647_BRAFL C3Y647_BRAFL C3Y693_BRAFL C3Y693_BRAFL C3Y8G7_BRAFL C3Y8G7_BRAFL C3Y929_BRAFL C3Y929_BRAFL C3Y9I0_BRAFL C3Y9I0_BRAFL C3Y9Z1_BRAFL C3Y9Z1_BRAFL C3YA64_BRAFL C3YA64_BRAFL C3YBM6_BRAFL C3YBM6_BRAFL C3YBM8_BRAFL C3YBM8_BRAFL C3YBP7_BRAFL C3YBP7_BRAFL C3YBY7_BRAFL C3YBY7_BRAFL C3YC02_BRAFL C3YC02_BRAFL C3YC91_BRAFL C3YC91_BRAFL C3YD41_BRAFL C3YD41_BRAFL C3YD45_BRAFL C3YD45_BRAFL C3YD69_BRAFL C3YD69_BRAFL C3YDJ1_BRAFL C3YDJ1_BRAFL C3YDW0_BRAFL C3YDW0_BRAFL C3YDW7_BRAFL C3YDW7_BRAFL C3YEB3_BRAFL C3YEB3_BRAFL C3YEB7_BRAFL C3YEB7_BRAFL C3YEK2_BRAFL C3YEK2_BRAFL C3YEN0_BRAFL C3YEN0_BRAFL C3YEN1_BRAFL C3YEN1_BRAFL C3YGG3_BRAFL C3YGG3_BRAFL C3YGQ8_BRAFL C3YGQ8_BRAFL C3YH75_BRAFL C3YH75_BRAFL C3YK92_BRAFL C3YK92_BRAFL C3YKY8_BRAFL C3YKY8_BRAFL C3YL56_BRAFL C3YL56_BRAFL C3YLD4_BRAFL C3YLD4_BRAFL C3YLI3_BRAFL C3YLI3_BRAFL C3YLT3_BRAFL C3YLT3_BRAFL C3YN18_BRAFL C3YN18_BRAFL C3YN27_BRAFL C3YN27_BRAFL C3YNL0_BRAFL C3YNL0_BRAFL C3YNT1_BRAFL C3YNT1_BRAFL C3YQ98_BRAFL C3YQ98_BRAFL C3YQI6_BRAFL C3YQI6_BRAFL C3YRU6_BRAFL C3YRU6_BRAFL C3YTK8_BRAFL C3YTK8_BRAFL C3YTQ9_BRAFL C3YTQ9_BRAFL C3YV24_BRAFL C3YV24_BRAFL C3YV43_BRAFL C3YV43_BRAFL C3YVD4_BRAFL C3YVD4_BRAFL C3YVK1_BRAFL C3YVK1_BRAFL C3YW09_BRAFL C3YW09_BRAFL C3YW52_BRAFL C3YW52_BRAFL C3YW63_BRAFL C3YW63_BRAFL C3YWG2_BRAFL C3YWG2_BRAFL C3YWG3_BRAFL C3YWG3_BRAFL C3YWU4_BRAFL C3YWU4_BRAFL C3YX15_BRAFL C3YX15_BRAFL C3YXI9_BRAFL C3YXI9_BRAFL C3YY41_BRAFL C3YY41_BRAFL C3YYC3_BRAFL C3YYC3_BRAFL C3Z0A4_BRAFL C3Z0A4_BRAFL C3Z2E0_BRAFL C3Z2E0_BRAFL C3Z2E1_BRAFL C3Z2E1_BRAFL C3Z313_BRAFL C3Z313_BRAFL C3Z334_BRAFL C3Z334_BRAFL C3Z3J6_BRAFL C3Z3J6_BRAFL C3Z3T8_BRAFL C3Z3T8_BRAFL C3Z3Y2_BRAFL C3Z3Y2_BRAFL C3Z5Q3_BRAFL C3Z5Q3_BRAFL C3Z5Q6_BRAFL C3Z5Q6_BRAFL C3Z647_BRAFL C3Z647_BRAFL C3Z6M7_BRAFL C3Z6M7_BRAFL C3Z7G5_BRAFL C3Z7G5_BRAFL C3Z898_BRAFL C3Z898_BRAFL C3Z918_BRAFL C3Z918_BRAFL C3Z9K5_BRAFL C3Z9K5_BRAFL C3ZAC6_BRAFL C3ZAC6_BRAFL C3ZBW5_BRAFL C3ZBW5_BRAFL C3ZC39_BRAFL C3ZC39_BRAFL C3ZC47_BRAFL C3ZC47_BRAFL C3ZCP1_BRAFL C3ZCP1_BRAFL C3ZCP3_BRAFL C3ZCP3_BRAFL C3ZCT5_BRAFL C3ZCT5_BRAFL C3ZCV2_BRAFL C3ZCV2_BRAFL C3ZD38_BRAFL C3ZD38_BRAFL C3ZDV4_BRAFL C3ZDV4_BRAFL C3ZDV6_BRAFL C3ZDV6_BRAFL C3ZEM7_BRAFL C3ZEM7_BRAFL C3ZES3_BRAFL C3ZES3_BRAFL C3ZEY7_BRAFL C3ZEY7_BRAFL C3ZFE4_BRAFL C3ZFE4_BRAFL C3ZG24_BRAFL C3ZG24_BRAFL C3ZJ43_BRAFL C3ZJ43_BRAFL PAX-6 PAX-6 C3ZLN6_BRAFL C3ZLN6_BRAFL C3ZMG9_BRAFL C3ZMG9_BRAFL C3ZQF0_BRAFL C3ZQF0_BRAFL C3ZQG2_BRAFL C3ZQG2_BRAFL C3ZQP1_BRAFL C3ZQP1_BRAFL C3ZQZ0_BRAFL C3ZQZ0_BRAFL C3ZSP8_BRAFL C3ZSP8_BRAFL C3ZT09_BRAFL C3ZT09_BRAFL C3ZTY1_BRAFL C3ZTY1_BRAFL C3ZU05_BRAFL C3ZU05_BRAFL C3ZU89_BRAFL C3ZU89_BRAFL C3ZU96_BRAFL C3ZU96_BRAFL C3ZV89_BRAFL C3ZV89_BRAFL C3ZVN5_BRAFL C3ZVN5_BRAFL C3ZWG1_BRAFL C3ZWG1_BRAFL C3ZYU1_BRAFL C3ZYU1_BRAFL C3ZZ46_BRAFL C3ZZ46_BRAFL C3ZZC8_BRAFL C3ZZC8_BRAFL C3ZZX6_BRAFL C3ZZX6_BRAFL C4A0B8_BRAFL C4A0B8_BRAFL C4A0C4_BRAFL C4A0C4_BRAFL C4A0F0_BRAFL C4A0F0_BRAFL C4A0W1_BRAFL C4A0W1_BRAFL
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
C3XPP3_BRAFLTranscription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (136 aa)
C3XPX8_BRAFLRPOL4c domain-containing protein. (142 aa)
C3XQ24_BRAFLUncharacterized protein. (896 aa)
C3XRA2_BRAFLDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (125 aa)
C3XSA2_BRAFLTFIIIC_sub6 domain-containing protein. (219 aa)
C3XSK0_BRAFLCYCLIN domain-containing protein; Belongs to the cyclin family. (257 aa)
C3XTJ3_BRAFLTFIID_20kDa domain-containing protein. (184 aa)
C3XU44_BRAFLTAF4 domain-containing protein. (195 aa)
C3XU45_BRAFLTAF4 domain-containing protein. (58 aa)
C3XU46_BRAFLTAFH domain-containing protein. (78 aa)
C3XUR8_BRAFLUncharacterized protein. (221 aa)
C3XVF6_BRAFLUncharacterized protein. (210 aa)
C3XWK5_BRAFLTAFII55_N domain-containing protein. (381 aa)
C3XX69_BRAFLHelicase ATP-binding domain-containing protein. (692 aa)
C3XZ17_BRAFLDNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (317 aa)
C3Y0C1_BRAFLUncharacterized protein. (320 aa)
C3Y0H1_BRAFLHelicase ATP-binding domain-containing protein. (763 aa)
C3Y0I0_BRAFLUncharacterized protein. (311 aa)
C3Y1R6_BRAFLUncharacterized protein. (206 aa)
C3Y1V7_BRAFLUncharacterized protein. (144 aa)
C3Y255_BRAFLDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (108 aa)
C3Y2A7_BRAFLUncharacterized protein. (103 aa)
C3Y2N3_BRAFLUncharacterized protein. (585 aa)
C3Y3A3_BRAFLUncharacterized protein. (2008 aa)
C3Y3C6_BRAFLUncharacterized protein. (376 aa)
C3Y529_BRAFLTPR_REGION domain-containing protein. (1183 aa)
C3Y5M2_BRAFLUncharacterized protein. (390 aa)
C3Y5U9_BRAFLDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1104 aa)
C3Y645_BRAFLUncharacterized protein. (68 aa)
C3Y647_BRAFLTFIIS central domain-containing protein. (130 aa)
C3Y693_BRAFLUncharacterized protein. (551 aa)
C3Y8G7_BRAFLUncharacterized protein. (576 aa)
C3Y929_BRAFLUncharacterized protein. (697 aa)
C3Y9I0_BRAFLUncharacterized protein. (203 aa)
C3Y9Z1_BRAFLUncharacterized protein. (1664 aa)
C3YA64_BRAFLUncharacterized protein. (352 aa)
C3YBM6_BRAFLUncharacterized protein. (138 aa)
C3YBM8_BRAFLProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (218 aa)
C3YBP7_BRAFLBRCT domain-containing protein. (531 aa)
C3YBY7_BRAFLUncharacterized protein. (798 aa)
C3YC02_BRAFLEAF domain-containing protein. (256 aa)
C3YC91_BRAFLUncharacterized protein. (1181 aa)
C3YD41_BRAFLRPOL4c domain-containing protein. (139 aa)
C3YD45_BRAFLTranscription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1823 aa)
C3YD69_BRAFLUncharacterized protein. (573 aa)
C3YDJ1_BRAFLTranscription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family. (117 aa)
C3YDW0_BRAFLUncharacterized protein. (951 aa)
C3YDW7_BRAFLUncharacterized protein. (946 aa)
C3YEB3_BRAFLUncharacterized protein. (975 aa)
C3YEB7_BRAFLRNA_pol_Rpb1_1 domain-containing protein. (384 aa)
C3YEK2_BRAFLWD_REPEATS_REGION domain-containing protein. (1491 aa)
C3YEN0_BRAFLUncharacterized protein. (721 aa)
C3YEN1_BRAFLTAFH domain-containing protein. (590 aa)
C3YGG3_BRAFLUncharacterized protein. (582 aa)
C3YGQ8_BRAFLTFIIB-type domain-containing protein. (153 aa)
C3YH75_BRAFLUncharacterized protein. (129 aa)
C3YK92_BRAFLUncharacterized protein. (100 aa)
C3YKY8_BRAFLWD_REPEATS_REGION domain-containing protein. (615 aa)
C3YL56_BRAFLUncharacterized protein. (657 aa)
C3YLD4_BRAFLUncharacterized protein. (1003 aa)
C3YLI3_BRAFLPHD-type domain-containing protein. (1052 aa)
C3YLT3_BRAFLTranscription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (82 aa)
C3YN18_BRAFLGeneral transcription factor IIH subunit. (396 aa)
C3YN27_BRAFLUncharacterized protein. (650 aa)
C3YNL0_BRAFLUncharacterized protein. (435 aa)
C3YNT1_BRAFLSANT domain-containing protein. (918 aa)
C3YQ98_BRAFLUncharacterized protein. (614 aa)
C3YQI6_BRAFLTranscription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (534 aa)
C3YRU6_BRAFLRNA_pol_L_2 domain-containing protein. (110 aa)
C3YTK8_BRAFLGeneral transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (457 aa)
C3YTQ9_BRAFLUncharacterized protein. (501 aa)
C3YV24_BRAFLUncharacterized protein. (188 aa)
C3YV43_BRAFLB-block_TFIIIC domain-containing protein. (1752 aa)
C3YVD4_BRAFLTranscription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (298 aa)
C3YVK1_BRAFLUncharacterized protein. (230 aa)
C3YW09_BRAFLTAFII28 domain-containing protein. (106 aa)
C3YW52_BRAFLDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1140 aa)
C3YW63_BRAFLProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (334 aa)
C3YWG2_BRAFLUncharacterized protein. (590 aa)
C3YWG3_BRAFLUncharacterized protein. (249 aa)
C3YWU4_BRAFLUncharacterized protein. (169 aa)
C3YX15_BRAFLPeptidase_M1 domain-containing protein. (1059 aa)
C3YXI9_BRAFLPeptidase_M1 domain-containing protein. (995 aa)
C3YY41_BRAFLRNA_pol_L_2 domain-containing protein. (117 aa)
C3YYC3_BRAFLDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1137 aa)
C3Z0A4_BRAFLUncharacterized protein. (241 aa)
C3Z2E0_BRAFLHTH TFE/IIEalpha-type domain-containing protein. (429 aa)
C3Z2E1_BRAFLUncharacterized protein. (779 aa)
C3Z313_BRAFLHDAg domain-containing protein. (459 aa)
C3Z334_BRAFLUncharacterized protein. (104 aa)
C3Z3J6_BRAFLRPOLD domain-containing protein. (290 aa)
C3Z3T8_BRAFLUncharacterized protein; Belongs to the cyclin family. (751 aa)
C3Z3Y2_BRAFLFACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (710 aa)
C3Z5Q3_BRAFLUncharacterized protein. (1287 aa)
C3Z5Q6_BRAFLUncharacterized protein. (71 aa)
C3Z647_BRAFLUncharacterized protein. (218 aa)
C3Z6M7_BRAFLHHH_7 domain-containing protein. (944 aa)
C3Z7G5_BRAFLUncharacterized protein. (548 aa)
C3Z898_BRAFLGeneral transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
C3Z918_BRAFLRPOLD domain-containing protein. (275 aa)
C3Z9K5_BRAFLTFIIS N-terminal domain-containing protein. (712 aa)
C3ZAC6_BRAFLProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (340 aa)
C3ZBW5_BRAFLDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1731 aa)
C3ZC39_BRAFLUncharacterized protein. (64 aa)
C3ZC47_BRAFLBTP domain-containing protein. (286 aa)
C3ZCP1_BRAFLTFIIB-type domain-containing protein. (319 aa)
C3ZCP3_BRAFLProtein kinase domain-containing protein; Belongs to the protein kinase superfamily. (380 aa)
C3ZCT5_BRAFLUncharacterized protein. (588 aa)
C3ZCV2_BRAFLUncharacterized protein. (205 aa)
C3ZD38_BRAFLDUF2236 domain-containing protein. (382 aa)
C3ZDV4_BRAFLWD_REPEATS_REGION domain-containing protein. (444 aa)
C3ZDV6_BRAFLUncharacterized protein. (559 aa)
C3ZEM7_BRAFLTFIIS N-terminal domain-containing protein. (295 aa)
C3ZES3_BRAFLDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1934 aa)
C3ZEY7_BRAFLTAF domain-containing protein. (653 aa)
C3ZFE4_BRAFLUncharacterized protein. (144 aa)
C3ZG24_BRAFLUncharacterized protein. (536 aa)
C3ZJ43_BRAFLUncharacterized protein. (210 aa)
PAX-6Uncharacterized protein. (160 aa)
C3ZLN6_BRAFLUncharacterized protein. (162 aa)
C3ZMG9_BRAFLTFIIB-type domain-containing protein. (401 aa)
C3ZQF0_BRAFLUncharacterized protein. (210 aa)
C3ZQG2_BRAFLPlus3 domain-containing protein. (605 aa)
C3ZQP1_BRAFLUncharacterized protein. (180 aa)
C3ZQZ0_BRAFLUncharacterized protein. (172 aa)
C3ZSP8_BRAFLUncharacterized protein. (592 aa)
C3ZT09_BRAFLCYCLIN domain-containing protein; Belongs to the cyclin family. (326 aa)
C3ZTY1_BRAFLUncharacterized protein. (1436 aa)
C3ZU05_BRAFLEGF-like domain-containing protein. (285 aa)
C3ZU89_BRAFLPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (530 aa)
C3ZU96_BRAFLPolynucleotide 5'-triphosphatase; Bifunctional mRNA-capping enzyme exhibiting RNA 5'- triphosphatase activity in the N-terminal part and mRNA guanylyltransferase activity in the C-terminal part. Catalyzes the first two steps of cap formation: by removing the gamma-phosphate from the 5'-triphosphate end of nascent mRNA to yield a diphosphate end, and by transferring the gmp moiety of GTP to the 5'-diphosphate terminus. (643 aa)
C3ZV89_BRAFLmRNA cap 0 methyltransferase domain-containing protein. (294 aa)
C3ZVN5_BRAFLUncharacterized protein. (125 aa)
C3ZWG1_BRAFLHTH_9 domain-containing protein. (204 aa)
C3ZYU1_BRAFLDUF2236 domain-containing protein. (276 aa)
C3ZZ46_BRAFLUncharacterized protein. (218 aa)
C3ZZC8_BRAFLUncharacterized protein. (138 aa)
C3ZZX6_BRAFLUncharacterized protein. (277 aa)
C4A0B8_BRAFLUncharacterized protein. (503 aa)
C4A0C4_BRAFLDUF2236 domain-containing protein. (378 aa)
C4A0F0_BRAFLUncharacterized protein. (324 aa)
C4A0W1_BRAFLCYCLIN domain-containing protein; Belongs to the cyclin family. (326 aa)
Your Current Organism:
Branchiostoma floridae
NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet
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