42 items (Branchiostoma floridae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPP3_BRAFL	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (136 aa)
	C3XTJ3_BRAFL	TFIID_20kDa domain-containing protein. (184 aa)
	C3XU44_BRAFL	TAF4 domain-containing protein. (195 aa)
	C3XU45_BRAFL	TAF4 domain-containing protein. (58 aa)
	C3XU46_BRAFL	TAFH domain-containing protein. (78 aa)
	C3XWK5_BRAFL	TAFII55_N domain-containing protein. (381 aa)
	C3XX69_BRAFL	Helicase ATP-binding domain-containing protein. (692 aa)
	C3Y0C1_BRAFL	Uncharacterized protein. (320 aa)
	C3Y0H1_BRAFL	Helicase ATP-binding domain-containing protein. (763 aa)
	C3Y0I0_BRAFL	Uncharacterized protein. (311 aa)
	C3Y3A3_BRAFL	Uncharacterized protein. (2008 aa)
	C3Y693_BRAFL	Uncharacterized protein. (551 aa)
	C3YBM6_BRAFL	Uncharacterized protein. (138 aa)
	C3YBM8_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (218 aa)
	C3YBY7_BRAFL	Uncharacterized protein. (798 aa)
	C3YD69_BRAFL	Uncharacterized protein. (573 aa)
	C3YEK2_BRAFL	WD_REPEATS_REGION domain-containing protein. (1491 aa)
	C3YEN0_BRAFL	Uncharacterized protein. (721 aa)
	C3YEN1_BRAFL	TAFH domain-containing protein. (590 aa)
	C3YK92_BRAFL	Uncharacterized protein. (100 aa)
	C3YLI3_BRAFL	PHD-type domain-containing protein. (1052 aa)
	C3YN18_BRAFL	General transcription factor IIH subunit. (396 aa)
	C3YQI6_BRAFL	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (534 aa)
	C3YTK8_BRAFL	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (457 aa)
	C3YVD4_BRAFL	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (298 aa)
	C3YVK1_BRAFL	Uncharacterized protein. (230 aa)
	C3YW09_BRAFL	TAFII28 domain-containing protein. (106 aa)
	C3YX15_BRAFL	Peptidase_M1 domain-containing protein. (1059 aa)
	C3YXI9_BRAFL	Peptidase_M1 domain-containing protein. (995 aa)
	C3Z2E0_BRAFL	HTH TFE/IIEalpha-type domain-containing protein. (429 aa)
	C3Z5Q6_BRAFL	Uncharacterized protein. (71 aa)
	C3Z898_BRAFL	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (249 aa)
	C3ZC47_BRAFL	BTP domain-containing protein. (286 aa)
	C3ZCP1_BRAFL	TFIIB-type domain-containing protein. (319 aa)
	C3ZCV2_BRAFL	Uncharacterized protein. (205 aa)
	C3ZDV4_BRAFL	WD_REPEATS_REGION domain-containing protein. (444 aa)
	C3ZDV6_BRAFL	Uncharacterized protein. (559 aa)
	C3ZEY7_BRAFL	TAF domain-containing protein. (653 aa)
	C3ZSP8_BRAFL	Uncharacterized protein. (592 aa)
	C3ZT09_BRAFL	CYCLIN domain-containing protein; Belongs to the cyclin family. (326 aa)
	C4A0C4_BRAFL	DUF2236 domain-containing protein. (378 aa)
	C4A0W1_BRAFL	CYCLIN domain-containing protein; Belongs to the cyclin family. (326 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPP3_BRAFL	C3XTJ3_BRAFL	C3XPP3	C3XTJ3	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TFIID_20kDa domain-containing protein.	0.999
C3XPP3_BRAFL	C3XU44_BRAFL	C3XPP3	C3XU44	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TAF4 domain-containing protein.	0.929
C3XPP3_BRAFL	C3XU45_BRAFL	C3XPP3	C3XU45	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TAF4 domain-containing protein.	0.929
C3XPP3_BRAFL	C3XU46_BRAFL	C3XPP3	C3XU46	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TAFH domain-containing protein.	0.929
C3XPP3_BRAFL	C3XWK5_BRAFL	C3XPP3	C3XWK5	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TAFII55_N domain-containing protein.	0.999
C3XPP3_BRAFL	C3XX69_BRAFL	C3XPP3	C3XX69	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Helicase ATP-binding domain-containing protein.	0.587
C3XPP3_BRAFL	C3Y0C1_BRAFL	C3XPP3	C3Y0C1	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.998
C3XPP3_BRAFL	C3Y0H1_BRAFL	C3XPP3	C3Y0H1	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Helicase ATP-binding domain-containing protein.	0.808
C3XPP3_BRAFL	C3Y0I0_BRAFL	C3XPP3	C3Y0I0	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.836
C3XPP3_BRAFL	C3Y3A3_BRAFL	C3XPP3	C3Y3A3	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.999
C3XPP3_BRAFL	C3Y693_BRAFL	C3XPP3	C3Y693	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.808
C3XPP3_BRAFL	C3YBM6_BRAFL	C3XPP3	C3YBM6	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.615
C3XPP3_BRAFL	C3YBM8_BRAFL	C3XPP3	C3YBM8	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.615
C3XPP3_BRAFL	C3YBY7_BRAFL	C3XPP3	C3YBY7	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.808
C3XPP3_BRAFL	C3YD69_BRAFL	C3XPP3	C3YD69	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.813
C3XPP3_BRAFL	C3YEK2_BRAFL	C3XPP3	C3YEK2	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	WD_REPEATS_REGION domain-containing protein.	0.926
C3XPP3_BRAFL	C3YEN0_BRAFL	C3XPP3	C3YEN0	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.929
C3XPP3_BRAFL	C3YEN1_BRAFL	C3XPP3	C3YEN1	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	TAFH domain-containing protein.	0.929
C3XPP3_BRAFL	C3YK92_BRAFL	C3XPP3	C3YK92	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Uncharacterized protein.	0.615
C3XPP3_BRAFL	C3YLI3_BRAFL	C3XPP3	C3YLI3	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	PHD-type domain-containing protein.	0.997