(30 nodes) Mixed, incl. Torsin, and Intermediate filament network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y306_BRAFL	Uncharacterized protein. (543 aa)
	C3Y307_BRAFL	Uncharacterized protein. (429 aa)
	C3Y6R4_BRAFL	Uncharacterized protein. (433 aa)
	C3Y8E0_BRAFL	Uncharacterized protein. (267 aa)
	C3YEN4_BRAFL	Uncharacterized protein. (549 aa)
	C3YGB4_BRAFL	Uncharacterized protein. (1687 aa)
	C3YNL4_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein. (322 aa)
	C3YQY3_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (335 aa)
	C3YQY5_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (327 aa)
	C3YQY9_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (328 aa)
	C3YQZ1_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (347 aa)
	C3YQZ2_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (350 aa)
	C3YTT1_BRAFL	Uncharacterized protein. (324 aa)
	C3YTT7_BRAFL	Uncharacterized protein. (376 aa)
	C3YTV1_BRAFL	Uncharacterized protein. (249 aa)
	C3YU23_BRAFL	Uncharacterized protein. (275 aa)
	C3YU25_BRAFL	Uncharacterized protein. (568 aa)
	C3YVQ3_BRAFL	Uncharacterized protein. (350 aa)
	C3Z0E1_BRAFL	Ig-like domain-containing protein. (97 aa)
	C3Z7Y3_BRAFL	Torsin. (348 aa)
	C3Z864_BRAFL	VWFA domain-containing protein. (153 aa)
	C3Z865_BRAFL	VWFA domain-containing protein. (153 aa)
	C3Z925_BRAFL	Uncharacterized protein. (2131 aa)
	C3Z9Y1_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (549 aa)
	C3ZAM6_BRAFL	Uncharacterized protein. (87 aa)
	C3ZP45_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (330 aa)
	C3ZQE3_BRAFL	Seryl_tRNA_N domain-containing protein. (387 aa)
	C3ZRH0_BRAFL	Uncharacterized protein. (465 aa)
	C3ZTG6_BRAFL	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (312 aa)
	C3ZWP4_BRAFL	Uncharacterized protein. (137 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y307_BRAFL	C3YTT7_BRAFL	C3Y307	C3YTT7	Uncharacterized protein.	Uncharacterized protein.	0.416
C3Y8E0_BRAFL	C3YTT7_BRAFL	C3Y8E0	C3YTT7	Uncharacterized protein.	Uncharacterized protein.	0.435
C3YNL4_BRAFL	C3ZTG6_BRAFL	C3YNL4	C3ZTG6	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.413
C3YTT7_BRAFL	C3Y307_BRAFL	C3YTT7	C3Y307	Uncharacterized protein.	Uncharacterized protein.	0.416
C3YTT7_BRAFL	C3Y8E0_BRAFL	C3YTT7	C3Y8E0	Uncharacterized protein.	Uncharacterized protein.	0.435
C3YTT7_BRAFL	C3YTV1_BRAFL	C3YTT7	C3YTV1	Uncharacterized protein.	Uncharacterized protein.	0.426
C3YTT7_BRAFL	C3YU25_BRAFL	C3YTT7	C3YU25	Uncharacterized protein.	Uncharacterized protein.	0.487
C3YTT7_BRAFL	C3Z7Y3_BRAFL	C3YTT7	C3Z7Y3	Uncharacterized protein.	Torsin.	0.487
C3YTT7_BRAFL	C3ZRH0_BRAFL	C3YTT7	C3ZRH0	Uncharacterized protein.	Uncharacterized protein.	0.435
C3YTT7_BRAFL	C3ZWP4_BRAFL	C3YTT7	C3ZWP4	Uncharacterized protein.	Uncharacterized protein.	0.487
C3YTV1_BRAFL	C3YTT7_BRAFL	C3YTV1	C3YTT7	Uncharacterized protein.	Uncharacterized protein.	0.426
C3YU25_BRAFL	C3YTT7_BRAFL	C3YU25	C3YTT7	Uncharacterized protein.	Uncharacterized protein.	0.487
C3Z7Y3_BRAFL	C3YTT7_BRAFL	C3Z7Y3	C3YTT7	Torsin.	Uncharacterized protein.	0.487
C3ZRH0_BRAFL	C3YTT7_BRAFL	C3ZRH0	C3YTT7	Uncharacterized protein.	Uncharacterized protein.	0.435
C3ZTG6_BRAFL	C3YNL4_BRAFL	C3ZTG6	C3YNL4	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.413
C3ZWP4_BRAFL	C3YTT7_BRAFL	C3ZWP4	C3YTT7	Uncharacterized protein.	Uncharacterized protein.	0.487