(50 nodes) Mixed, incl. Apoptotic factor-mediated response, and Cysteine-type endopeptidase activity involved in apoptotic process network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XPG6_BRAFL	Uncharacterized protein. (397 aa)
	C3XPS9_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (309 aa)
	C3XUC4_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (399 aa)
	C3XVB7_BRAFL	Death domain-containing protein. (872 aa)
	C3Y042_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (262 aa)
	C3Y0Z2_BRAFL	Uncharacterized protein. (386 aa)
	C3Y396_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (242 aa)
	C3Y4H7_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (7154 aa)
	C3Y5Y4_BRAFL	Uncharacterized protein. (2080 aa)
	C3Y6S7_BRAFL	CARD domain-containing protein. (180 aa)
	C3Y726_BRAFL	Uncharacterized protein. (215 aa)
	C3Y9F7_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (431 aa)
	C3YAZ4_BRAFL	CARD domain-containing protein. (324 aa)
	C3YCP0_BRAFL	NB-ARC domain-containing protein. (475 aa)
	C3YDF1_BRAFL	Uncharacterized protein. (273 aa)
	C3YEP8_BRAFL	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (104 aa)
	C3YK85_BRAFL	Microtubule-associated protein. (314 aa)
	C3YM25_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (337 aa)
	C3YN63_BRAFL	Uncharacterized protein. (1248 aa)
	C3YPY1_BRAFL	Uncharacterized protein; Belongs to the intermediate filament family. (619 aa)
	C3YQ93_BRAFL	Uncharacterized protein. (1793 aa)
	C3YUF2_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (224 aa)
	C3YUF3_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (262 aa)
	C3YW41_BRAFL	DUF4203 domain-containing protein. (264 aa)
	C3YY70_BRAFL	HEPN domain-containing protein. (2710 aa)
	C3YZ38_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (809 aa)
	C3YZV6_BRAFL	Uncharacterized protein. (1238 aa)
	C3Z391_BRAFL	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain. (111 aa)
	C3Z4Z5_BRAFL	NACHT domain-containing protein. (937 aa)
	C3Z5V3_BRAFL	RING-type domain-containing protein. (376 aa)
	C3Z5V4_BRAFL	RING-type domain-containing protein. (371 aa)
	C3Z626_BRAFL	Uncharacterized protein. (353 aa)
	C3ZAU7_BRAFL	WD_REPEATS_REGION domain-containing protein. (1691 aa)
	C3ZDH2_BRAFL	RING-type domain-containing protein. (426 aa)
	C3ZFB2_BRAFL	Uncharacterized protein. (164 aa)
	C3ZGI6_BRAFL	NB-ARC domain-containing protein. (1531 aa)
	C3ZHT7_BRAFL	Uncharacterized protein. (307 aa)
	C3ZJP7_BRAFL	Uncharacterized protein. (1461 aa)
	C3ZJQ8_BRAFL	RING-type domain-containing protein. (267 aa)
	C3ZJU4_BRAFL	Uncharacterized protein. (191 aa)
	C3ZP46_BRAFL	IF rod domain-containing protein; Belongs to the intermediate filament family. (322 aa)
	C3ZQ20_BRAFL	Uncharacterized protein. (62 aa)
	C3ZQ72_BRAFL	Uncharacterized protein. (173 aa)
	C3ZQ95_BRAFL	HEPN domain-containing protein. (4368 aa)
	C3ZQU1_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (770 aa)
	C3ZWF0_BRAFL	Uncharacterized protein; Belongs to the intermediate filament family. (989 aa)
	C3ZXH5_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (439 aa)
	C3ZY21_BRAFL	Uncharacterized protein; Belongs to the peptidase C14A family. (246 aa)
	C3ZY28_BRAFL	CARD domain-containing protein. (105 aa)
	C4A0L4_BRAFL	NB-ARC domain-containing protein. (301 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XPG6_BRAFL	C3Y0Z2_BRAFL	C3XPG6	C3Y0Z2	Uncharacterized protein.	Uncharacterized protein.	0.460
C3XPG6_BRAFL	C3YEP8_BRAFL	C3XPG6	C3YEP8	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.451
C3XPG6_BRAFL	C3Z391_BRAFL	C3XPG6	C3Z391	Uncharacterized protein.	Cytochrome c domain-containing protein; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.	0.451
C3XPG6_BRAFL	C3ZFB2_BRAFL	C3XPG6	C3ZFB2	Uncharacterized protein.	Uncharacterized protein.	0.400
C3XPG6_BRAFL	C3ZQ72_BRAFL	C3XPG6	C3ZQ72	Uncharacterized protein.	Uncharacterized protein.	0.400
C3XPS9_BRAFL	C3Y5Y4_BRAFL	C3XPS9	C3Y5Y4	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.535
C3XPS9_BRAFL	C3YQ93_BRAFL	C3XPS9	C3YQ93	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.535
C3XPS9_BRAFL	C3YZV6_BRAFL	C3XPS9	C3YZV6	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.585
C3XPS9_BRAFL	C3ZAU7_BRAFL	C3XPS9	C3ZAU7	Uncharacterized protein; Belongs to the peptidase C14A family.	WD_REPEATS_REGION domain-containing protein.	0.535
C3XPS9_BRAFL	C3ZHT7_BRAFL	C3XPS9	C3ZHT7	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.424
C3XUC4_BRAFL	C3Y5Y4_BRAFL	C3XUC4	C3Y5Y4	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.535
C3XUC4_BRAFL	C3YQ93_BRAFL	C3XUC4	C3YQ93	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.535
C3XUC4_BRAFL	C3YZV6_BRAFL	C3XUC4	C3YZV6	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.679
C3XUC4_BRAFL	C3Z5V3_BRAFL	C3XUC4	C3Z5V3	Uncharacterized protein; Belongs to the peptidase C14A family.	RING-type domain-containing protein.	0.402
C3XUC4_BRAFL	C3Z5V4_BRAFL	C3XUC4	C3Z5V4	Uncharacterized protein; Belongs to the peptidase C14A family.	RING-type domain-containing protein.	0.402
C3XUC4_BRAFL	C3ZAU7_BRAFL	C3XUC4	C3ZAU7	Uncharacterized protein; Belongs to the peptidase C14A family.	WD_REPEATS_REGION domain-containing protein.	0.535
C3XUC4_BRAFL	C3ZHT7_BRAFL	C3XUC4	C3ZHT7	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.424
C3XUC4_BRAFL	C3ZJQ8_BRAFL	C3XUC4	C3ZJQ8	Uncharacterized protein; Belongs to the peptidase C14A family.	RING-type domain-containing protein.	0.402
C3XUC4_BRAFL	C3ZQ20_BRAFL	C3XUC4	C3ZQ20	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein.	0.402
C3XUC4_BRAFL	C3ZWF0_BRAFL	C3XUC4	C3ZWF0	Uncharacterized protein; Belongs to the peptidase C14A family.	Uncharacterized protein; Belongs to the intermediate filament family.	0.607