(5 nodes) Kinetochore assembly, and Centromere complex assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XU84_BRAFL	Uncharacterized protein. (355 aa)
	C3Y1F4_BRAFL	Uncharacterized protein. (288 aa)
	C3YII8_BRAFL	CENP-C_C domain-containing protein. (1118 aa)
	C3Z7G6_BRAFL	Uncharacterized protein. (203 aa)
	C3ZE81_BRAFL	Uncharacterized protein. (517 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU84_BRAFL	C3Y1F4_BRAFL	C3XU84	C3Y1F4	Uncharacterized protein.	Uncharacterized protein.	0.989
C3XU84_BRAFL	C3YII8_BRAFL	C3XU84	C3YII8	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.971
C3XU84_BRAFL	C3Z7G6_BRAFL	C3XU84	C3Z7G6	Uncharacterized protein.	Uncharacterized protein.	0.991
C3XU84_BRAFL	C3ZE81_BRAFL	C3XU84	C3ZE81	Uncharacterized protein.	Uncharacterized protein.	0.992
C3Y1F4_BRAFL	C3XU84_BRAFL	C3Y1F4	C3XU84	Uncharacterized protein.	Uncharacterized protein.	0.989
C3Y1F4_BRAFL	C3YII8_BRAFL	C3Y1F4	C3YII8	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.956
C3Y1F4_BRAFL	C3Z7G6_BRAFL	C3Y1F4	C3Z7G6	Uncharacterized protein.	Uncharacterized protein.	0.989
C3Y1F4_BRAFL	C3ZE81_BRAFL	C3Y1F4	C3ZE81	Uncharacterized protein.	Uncharacterized protein.	0.991
C3YII8_BRAFL	C3XU84_BRAFL	C3YII8	C3XU84	CENP-C_C domain-containing protein.	Uncharacterized protein.	0.971
C3YII8_BRAFL	C3Y1F4_BRAFL	C3YII8	C3Y1F4	CENP-C_C domain-containing protein.	Uncharacterized protein.	0.956
C3YII8_BRAFL	C3Z7G6_BRAFL	C3YII8	C3Z7G6	CENP-C_C domain-containing protein.	Uncharacterized protein.	0.959
C3YII8_BRAFL	C3ZE81_BRAFL	C3YII8	C3ZE81	CENP-C_C domain-containing protein.	Uncharacterized protein.	0.845
C3Z7G6_BRAFL	C3XU84_BRAFL	C3Z7G6	C3XU84	Uncharacterized protein.	Uncharacterized protein.	0.991
C3Z7G6_BRAFL	C3Y1F4_BRAFL	C3Z7G6	C3Y1F4	Uncharacterized protein.	Uncharacterized protein.	0.989
C3Z7G6_BRAFL	C3YII8_BRAFL	C3Z7G6	C3YII8	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.959
C3Z7G6_BRAFL	C3ZE81_BRAFL	C3Z7G6	C3ZE81	Uncharacterized protein.	Uncharacterized protein.	0.991
C3ZE81_BRAFL	C3XU84_BRAFL	C3ZE81	C3XU84	Uncharacterized protein.	Uncharacterized protein.	0.992
C3ZE81_BRAFL	C3Y1F4_BRAFL	C3ZE81	C3Y1F4	Uncharacterized protein.	Uncharacterized protein.	0.991
C3ZE81_BRAFL	C3YII8_BRAFL	C3ZE81	C3YII8	Uncharacterized protein.	CENP-C_C domain-containing protein.	0.845
C3ZE81_BRAFL	C3Z7G6_BRAFL	C3ZE81	C3Z7G6	Uncharacterized protein.	Uncharacterized protein.	0.991