(27 nodes) Mixed, incl. Thioredoxin, and IRE1alpha activates chaperones network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XVR6_BRAFL	BZIP domain-containing protein. (242 aa)
	Thop1.1	BZIP domain-containing protein. (336 aa)
	C3Y0V0_BRAFL	Uncharacterized protein. (993 aa)
	C3Y2K5_BRAFL	ANK_REP_REGION domain-containing protein. (241 aa)
	C3Y996_BRAFL	Thioredoxin domain-containing protein. (684 aa)
	C3Y9W1_BRAFL	Calreticulin. (424 aa)
	C3YA24_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (778 aa)
	C3YCF8_BRAFL	Protein disulfide-isomerase. (504 aa)
	C3YD04_BRAFL	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (800 aa)
	C3YE16_BRAFL	Uncharacterized protein. (779 aa)
	C3YJQ3_BRAFL	Uncharacterized protein. (459 aa)
	C3YNT9_BRAFL	Protein disulfide-isomerase. (440 aa)
	C3YPY7_BRAFL	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (222 aa)
	C3YZR4_BRAFL	Uncharacterized protein. (485 aa)
	C3Z093_BRAFL	J domain-containing protein. (363 aa)
	C3Z2H2_BRAFL	Uncharacterized protein. (449 aa)
	C3ZAH9_BRAFL	Uncharacterized protein. (599 aa)
	C3ZAV0_BRAFL	Uncharacterized protein. (956 aa)
	C3ZBP5_BRAFL	Thioredoxin domain-containing protein. (391 aa)
	C3ZFH9_BRAFL	Thioredoxin domain-containing protein. (356 aa)
	C3ZG31_BRAFL	Uncharacterized protein. (474 aa)
	C3ZHE5_BRAFL	Protein disulfide-isomerase. (604 aa)
	C3ZQA0_BRAFL	Uncharacterized protein. (178 aa)
	C3ZTF9_BRAFL	Uncharacterized protein; Belongs to the heat shock protein 70 family. (665 aa)
	C3ZU13_BRAFL	Uncharacterized protein; Belongs to the protein disulfide isomerase family. (557 aa)
	C3ZY27_BRAFL	Peptidylprolyl isomerase. (131 aa)
	C3ZZ65_BRAFL	Uncharacterized protein; Belongs to the protein disulfide isomerase family. (443 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XVR6_BRAFL	C3Y0V0_BRAFL	C3XVR6	C3Y0V0	BZIP domain-containing protein.	Uncharacterized protein.	0.447
C3XVR6_BRAFL	C3Y9W1_BRAFL	C3XVR6	C3Y9W1	BZIP domain-containing protein.	Calreticulin.	0.425
C3XVR6_BRAFL	C3YD04_BRAFL	C3XVR6	C3YD04	BZIP domain-containing protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.411
C3XVR6_BRAFL	C3YE16_BRAFL	C3XVR6	C3YE16	BZIP domain-containing protein.	Uncharacterized protein.	0.461
C3XVR6_BRAFL	C3YJQ3_BRAFL	C3XVR6	C3YJQ3	BZIP domain-containing protein.	Uncharacterized protein.	0.501
C3XVR6_BRAFL	C3ZAV0_BRAFL	C3XVR6	C3ZAV0	BZIP domain-containing protein.	Uncharacterized protein.	0.929
C3XVR6_BRAFL	C3ZQA0_BRAFL	C3XVR6	C3ZQA0	BZIP domain-containing protein.	Uncharacterized protein.	0.438
C3XVR6_BRAFL	C3ZTF9_BRAFL	C3XVR6	C3ZTF9	BZIP domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.462
C3Y0V0_BRAFL	C3XVR6_BRAFL	C3Y0V0	C3XVR6	Uncharacterized protein.	BZIP domain-containing protein.	0.447
C3Y0V0_BRAFL	C3Y2K5_BRAFL	C3Y0V0	C3Y2K5	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.972
C3Y0V0_BRAFL	C3Y996_BRAFL	C3Y0V0	C3Y996	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.499
C3Y0V0_BRAFL	C3Y9W1_BRAFL	C3Y0V0	C3Y9W1	Uncharacterized protein.	Calreticulin.	0.907
C3Y0V0_BRAFL	C3YCF8_BRAFL	C3Y0V0	C3YCF8	Uncharacterized protein.	Protein disulfide-isomerase.	0.559
C3Y0V0_BRAFL	C3YE16_BRAFL	C3Y0V0	C3YE16	Uncharacterized protein.	Uncharacterized protein.	0.790
C3Y0V0_BRAFL	C3YJQ3_BRAFL	C3Y0V0	C3YJQ3	Uncharacterized protein.	Uncharacterized protein.	0.742
C3Y0V0_BRAFL	C3YNT9_BRAFL	C3Y0V0	C3YNT9	Uncharacterized protein.	Protein disulfide-isomerase.	0.608
C3Y0V0_BRAFL	C3YZR4_BRAFL	C3Y0V0	C3YZR4	Uncharacterized protein.	Uncharacterized protein.	0.747
C3Y0V0_BRAFL	C3Z093_BRAFL	C3Y0V0	C3Z093	Uncharacterized protein.	J domain-containing protein.	0.692
C3Y0V0_BRAFL	C3Z2H2_BRAFL	C3Y0V0	C3Z2H2	Uncharacterized protein.	Uncharacterized protein.	0.586
C3Y0V0_BRAFL	C3ZBP5_BRAFL	C3Y0V0	C3ZBP5	Uncharacterized protein.	Thioredoxin domain-containing protein.	0.403