(5 nodes) Nuclear pore outer ring, and Nuclear pore complex assembly network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y7A7_BRAFL	WD_REPEATS_REGION domain-containing protein. (320 aa)
	C3YJ29_BRAFL	Uncharacterized protein. (131 aa)
	C3YXC1_BRAFL	WD_REPEATS_REGION domain-containing protein. (383 aa)
	C3ZK04_BRAFL	ELYS domain-containing protein. (1093 aa)
	C3ZK08_BRAFL	Uncharacterized protein. (503 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y7A7_BRAFL	C3YJ29_BRAFL	C3Y7A7	C3YJ29	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.997
C3Y7A7_BRAFL	C3YXC1_BRAFL	C3Y7A7	C3YXC1	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
C3Y7A7_BRAFL	C3ZK04_BRAFL	C3Y7A7	C3ZK04	WD_REPEATS_REGION domain-containing protein.	ELYS domain-containing protein.	0.964
C3Y7A7_BRAFL	C3ZK08_BRAFL	C3Y7A7	C3ZK08	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.964
C3YJ29_BRAFL	C3Y7A7_BRAFL	C3YJ29	C3Y7A7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.997
C3YJ29_BRAFL	C3YXC1_BRAFL	C3YJ29	C3YXC1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.980
C3YJ29_BRAFL	C3ZK04_BRAFL	C3YJ29	C3ZK04	Uncharacterized protein.	ELYS domain-containing protein.	0.903
C3YJ29_BRAFL	C3ZK08_BRAFL	C3YJ29	C3ZK08	Uncharacterized protein.	Uncharacterized protein.	0.903
C3YXC1_BRAFL	C3Y7A7_BRAFL	C3YXC1	C3Y7A7	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
C3YXC1_BRAFL	C3YJ29_BRAFL	C3YXC1	C3YJ29	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.980
C3YXC1_BRAFL	C3ZK04_BRAFL	C3YXC1	C3ZK04	WD_REPEATS_REGION domain-containing protein.	ELYS domain-containing protein.	0.962
C3YXC1_BRAFL	C3ZK08_BRAFL	C3YXC1	C3ZK08	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.962
C3ZK04_BRAFL	C3Y7A7_BRAFL	C3ZK04	C3Y7A7	ELYS domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.964
C3ZK04_BRAFL	C3YJ29_BRAFL	C3ZK04	C3YJ29	ELYS domain-containing protein.	Uncharacterized protein.	0.903
C3ZK04_BRAFL	C3YXC1_BRAFL	C3ZK04	C3YXC1	ELYS domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.962
C3ZK04_BRAFL	C3ZK08_BRAFL	C3ZK04	C3ZK08	ELYS domain-containing protein.	Uncharacterized protein.	0.950
C3ZK08_BRAFL	C3Y7A7_BRAFL	C3ZK08	C3Y7A7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.964
C3ZK08_BRAFL	C3YJ29_BRAFL	C3ZK08	C3YJ29	Uncharacterized protein.	Uncharacterized protein.	0.903
C3ZK08_BRAFL	C3YXC1_BRAFL	C3ZK08	C3YXC1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.962
C3ZK08_BRAFL	C3ZK04_BRAFL	C3ZK08	C3ZK04	Uncharacterized protein.	ELYS domain-containing protein.	0.950