(31 nodes) Maturation of 5.8S rRNA network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3Y211_BRAFL	Uncharacterized protein. (260 aa)
	C3XUE6_BRAFL	Uncharacterized protein. (156 aa)
	C3XU83_BRAFL	Uncharacterized protein. (367 aa)
	C3XU58_BRAFL	Uncharacterized protein. (246 aa)
	C3XU17_BRAFL	Uncharacterized protein. (291 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (245 aa)
	C3ZTA6_BRAFL	S1 motif domain-containing protein. (279 aa)
	C3ZLP6_BRAFL	HRDC domain-containing protein. (832 aa)
	C3ZBQ5_BRAFL	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (606 aa)
	C3ZAI9_BRAFL	CLP1_P domain-containing protein. (541 aa)
	C3ZA48_BRAFL	RRM domain-containing protein. (200 aa)
	C3Z8S3_BRAFL	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (588 aa)
	C3Z7D9_BRAFL	Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (336 aa)
	C3Z6U1_BRAFL	Exonuclease domain-containing protein. (222 aa)
	C3Z5L8_BRAFL	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (432 aa)
	C3Z210_BRAFL	SAP domain-containing protein. (279 aa)
	C3YZU4_BRAFL	Uncharacterized protein. (444 aa)
	C3YX53_BRAFL	Uncharacterized protein. (1637 aa)
	C3YVY1_BRAFL	Spb1_C domain-containing protein. (130 aa)
	C3YVY0_BRAFL	Uncharacterized protein. (321 aa)
	C3YT18_BRAFL	Uncharacterized protein. (961 aa)
	C3YRM7_BRAFL	Uncharacterized protein. (235 aa)
	C3YM54_BRAFL	KH_dom_type_1 domain-containing protein. (186 aa)
	C3YF65_BRAFL	Uncharacterized protein. (488 aa)
	C3YF64_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (4388 aa)
	C3YF62_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (311 aa)
	C3YCD3_BRAFL	Kri1_C domain-containing protein. (680 aa)
	C3YCD2_BRAFL	Kri1_C domain-containing protein. (728 aa)
	C3YBY1_BRAFL	Protein MAK16 homolog; Belongs to the MAK16 family. (292 aa)
	C3YA15_BRAFL	Brix domain-containing protein. (288 aa)
	C3Y8J2_BRAFL	Uncharacterized protein. (585 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU17_BRAFL	C3XU58_BRAFL	C3XU17	C3XU58	Uncharacterized protein.	Uncharacterized protein.	0.999
C3XU17_BRAFL	C3XUE6_BRAFL	C3XU17	C3XUE6	Uncharacterized protein.	Uncharacterized protein.	0.976
C3XU17_BRAFL	C3Y211_BRAFL	C3XU17	C3Y211	Uncharacterized protein.	Uncharacterized protein.	0.477
C3XU17_BRAFL	C3YA15_BRAFL	C3XU17	C3YA15	Uncharacterized protein.	Brix domain-containing protein.	0.572
C3XU17_BRAFL	C3YM54_BRAFL	C3XU17	C3YM54	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
C3XU17_BRAFL	C3YT18_BRAFL	C3XU17	C3YT18	Uncharacterized protein.	Uncharacterized protein.	0.992
C3XU17_BRAFL	C3YZU4_BRAFL	C3XU17	C3YZU4	Uncharacterized protein.	Uncharacterized protein.	0.999
C3XU17_BRAFL	C3Z5L8_BRAFL	C3XU17	C3Z5L8	Uncharacterized protein.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.565
C3XU17_BRAFL	C3ZLP6_BRAFL	C3XU17	C3ZLP6	Uncharacterized protein.	HRDC domain-containing protein.	0.999
C3XU17_BRAFL	C3ZTA6_BRAFL	C3XU17	C3ZTA6	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
C3XU58_BRAFL	C3XU17_BRAFL	C3XU58	C3XU17	Uncharacterized protein.	Uncharacterized protein.	0.999
C3XU58_BRAFL	C3XUE6_BRAFL	C3XU58	C3XUE6	Uncharacterized protein.	Uncharacterized protein.	0.972
C3XU58_BRAFL	C3YA15_BRAFL	C3XU58	C3YA15	Uncharacterized protein.	Brix domain-containing protein.	0.460
C3XU58_BRAFL	C3YM54_BRAFL	C3XU58	C3YM54	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
C3XU58_BRAFL	C3YT18_BRAFL	C3XU58	C3YT18	Uncharacterized protein.	Uncharacterized protein.	0.990
C3XU58_BRAFL	C3YZU4_BRAFL	C3XU58	C3YZU4	Uncharacterized protein.	Uncharacterized protein.	0.999
C3XU58_BRAFL	C3ZLP6_BRAFL	C3XU58	C3ZLP6	Uncharacterized protein.	HRDC domain-containing protein.	0.999
C3XU58_BRAFL	C3ZTA6_BRAFL	C3XU58	C3ZTA6	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
C3XUE6_BRAFL	C3XU17_BRAFL	C3XUE6	C3XU17	Uncharacterized protein.	Uncharacterized protein.	0.976
C3XUE6_BRAFL	C3XU58_BRAFL	C3XUE6	C3XU58	Uncharacterized protein.	Uncharacterized protein.	0.972