(12 nodes) Telomere maintenance via recombination network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZVI7_BRAFL	Uncharacterized protein; Belongs to the CGI121/TPRKB family. (175 aa)
	C3XS08_BRAFL	Uncharacterized protein. (644 aa)
	C3Y1S5_BRAFL	SMC_N domain-containing protein. (1096 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3YMQ0_BRAFL	SP-RING-type domain-containing protein. (252 aa)
	C3YVY6_BRAFL	RECA_2 domain-containing protein. (103 aa)
	C3YWA5_BRAFL	AAA_23 domain-containing protein. (187 aa)
	C3Z4J5_BRAFL	Uncharacterized protein. (2574 aa)
	C3ZNW9_BRAFL	ERCC4 domain-containing protein. (515 aa)
	C3ZNX8_BRAFL	Uncharacterized protein. (233 aa)
	C3ZS00_BRAFL	SMC_N domain-containing protein. (1059 aa)
	C3ZVK2_BRAFL	Uncharacterized protein; Belongs to the CGI121/TPRKB family. (157 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XS08_BRAFL	C3Y937_BRAFL	C3XS08	C3Y937	Uncharacterized protein.	Uncharacterized protein.	0.582
C3XS08_BRAFL	C3YWA5_BRAFL	C3XS08	C3YWA5	Uncharacterized protein.	AAA_23 domain-containing protein.	0.696
C3Y1S5_BRAFL	C3YMQ0_BRAFL	C3Y1S5	C3YMQ0	SMC_N domain-containing protein.	SP-RING-type domain-containing protein.	0.999
C3Y1S5_BRAFL	C3YVY6_BRAFL	C3Y1S5	C3YVY6	SMC_N domain-containing protein.	RECA_2 domain-containing protein.	0.745
C3Y1S5_BRAFL	C3YWA5_BRAFL	C3Y1S5	C3YWA5	SMC_N domain-containing protein.	AAA_23 domain-containing protein.	0.561
C3Y1S5_BRAFL	C3ZS00_BRAFL	C3Y1S5	C3ZS00	SMC_N domain-containing protein.	SMC_N domain-containing protein.	0.999
C3Y937_BRAFL	C3XS08_BRAFL	C3Y937	C3XS08	Uncharacterized protein.	Uncharacterized protein.	0.582
C3Y937_BRAFL	C3YVY6_BRAFL	C3Y937	C3YVY6	Uncharacterized protein.	RECA_2 domain-containing protein.	0.743
C3Y937_BRAFL	C3YWA5_BRAFL	C3Y937	C3YWA5	Uncharacterized protein.	AAA_23 domain-containing protein.	0.635
C3Y937_BRAFL	C3ZNW9_BRAFL	C3Y937	C3ZNW9	Uncharacterized protein.	ERCC4 domain-containing protein.	0.987
C3Y937_BRAFL	C3ZNX8_BRAFL	C3Y937	C3ZNX8	Uncharacterized protein.	Uncharacterized protein.	0.987
C3YMQ0_BRAFL	C3Y1S5_BRAFL	C3YMQ0	C3Y1S5	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999
C3YMQ0_BRAFL	C3YVY6_BRAFL	C3YMQ0	C3YVY6	SP-RING-type domain-containing protein.	RECA_2 domain-containing protein.	0.643
C3YMQ0_BRAFL	C3ZS00_BRAFL	C3YMQ0	C3ZS00	SP-RING-type domain-containing protein.	SMC_N domain-containing protein.	0.999
C3YVY6_BRAFL	C3Y1S5_BRAFL	C3YVY6	C3Y1S5	RECA_2 domain-containing protein.	SMC_N domain-containing protein.	0.745
C3YVY6_BRAFL	C3Y937_BRAFL	C3YVY6	C3Y937	RECA_2 domain-containing protein.	Uncharacterized protein.	0.743
C3YVY6_BRAFL	C3YMQ0_BRAFL	C3YVY6	C3YMQ0	RECA_2 domain-containing protein.	SP-RING-type domain-containing protein.	0.643
C3YVY6_BRAFL	C3YWA5_BRAFL	C3YVY6	C3YWA5	RECA_2 domain-containing protein.	AAA_23 domain-containing protein.	0.892
C3YVY6_BRAFL	C3ZNW9_BRAFL	C3YVY6	C3ZNW9	RECA_2 domain-containing protein.	ERCC4 domain-containing protein.	0.676
C3YVY6_BRAFL	C3ZNX8_BRAFL	C3YVY6	C3ZNX8	RECA_2 domain-containing protein.	Uncharacterized protein.	0.676