(21 nodes) Euchromatin network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XQU3_BRAFL	Fe2OG dioxygenase domain-containing protein. (365 aa)
	C3XU58_BRAFL	Uncharacterized protein. (246 aa)
	C3Y1Q4_BRAFL	Uncharacterized protein. (946 aa)
	C3Y529_BRAFL	TPR_REGION domain-containing protein. (1183 aa)
	C3Y551_BRAFL	Bromo domain-containing protein. (1500 aa)
	C3Y6A4_BRAFL	RuvB-like helicase; Belongs to the RuvB family. (468 aa)
	C3YC22_BRAFL	NARG2_C domain-containing protein. (992 aa)
	C3YIU7_BRAFL	Uncharacterized protein. (1125 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YL80_BRAFL	B30.2/SPRY domain-containing protein. (592 aa)
	C3YM54_BRAFL	KH_dom_type_1 domain-containing protein. (186 aa)
	C3YQP4_BRAFL	BZIP domain-containing protein; Belongs to the bZIP family. (321 aa)
	C3YVY8_BRAFL	SANT domain-containing protein. (359 aa)
	C3YXX8_BRAFL	BCAS3 domain-containing protein. (825 aa)
	C3Z4E3_BRAFL	WD_REPEATS_REGION domain-containing protein. (274 aa)
	C3Z6H1_BRAFL	Uncharacterized protein. (491 aa)
	C3Z6H2_BRAFL	NR LBD domain-containing protein. (121 aa)
	C3Z6H4_BRAFL	Uncharacterized protein. (320 aa)
	C3ZET0_BRAFL	Uncharacterized protein. (813 aa)
	C3ZLP6_BRAFL	HRDC domain-containing protein. (832 aa)
	C3ZLS8_BRAFL	Uncharacterized protein. (219 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XU58_BRAFL	C3Y1Q4_BRAFL	C3XU58	C3Y1Q4	Uncharacterized protein.	Uncharacterized protein.	0.865
C3XU58_BRAFL	C3YM54_BRAFL	C3XU58	C3YM54	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
C3XU58_BRAFL	C3Z4E3_BRAFL	C3XU58	C3Z4E3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.847
C3XU58_BRAFL	C3ZLP6_BRAFL	C3XU58	C3ZLP6	Uncharacterized protein.	HRDC domain-containing protein.	0.999
C3XU58_BRAFL	C3ZLS8_BRAFL	C3XU58	C3ZLS8	Uncharacterized protein.	Uncharacterized protein.	0.999
C3Y1Q4_BRAFL	C3XU58_BRAFL	C3Y1Q4	C3XU58	Uncharacterized protein.	Uncharacterized protein.	0.865
C3Y1Q4_BRAFL	C3YM54_BRAFL	C3Y1Q4	C3YM54	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.843
C3Y1Q4_BRAFL	C3Z4E3_BRAFL	C3Y1Q4	C3Z4E3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.998
C3Y1Q4_BRAFL	C3ZLP6_BRAFL	C3Y1Q4	C3ZLP6	Uncharacterized protein.	HRDC domain-containing protein.	0.706
C3Y1Q4_BRAFL	C3ZLS8_BRAFL	C3Y1Q4	C3ZLS8	Uncharacterized protein.	Uncharacterized protein.	0.896
C3Y529_BRAFL	C3Z4E3_BRAFL	C3Y529	C3Z4E3	TPR_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
C3Y551_BRAFL	C3YL80_BRAFL	C3Y551	C3YL80	Bromo domain-containing protein.	B30.2/SPRY domain-containing protein.	0.535
C3Y551_BRAFL	C3YVY8_BRAFL	C3Y551	C3YVY8	Bromo domain-containing protein.	SANT domain-containing protein.	0.753
C3YKX2_BRAFL	C3YQP4_BRAFL	C3YKX2	C3YQP4	Deacetylase sirtuin-type domain-containing protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.642
C3YL80_BRAFL	C3Y551_BRAFL	C3YL80	C3Y551	B30.2/SPRY domain-containing protein.	Bromo domain-containing protein.	0.535
C3YM54_BRAFL	C3XU58_BRAFL	C3YM54	C3XU58	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.999
C3YM54_BRAFL	C3Y1Q4_BRAFL	C3YM54	C3Y1Q4	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.843
C3YM54_BRAFL	C3Z4E3_BRAFL	C3YM54	C3Z4E3	KH_dom_type_1 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.789
C3YM54_BRAFL	C3ZLP6_BRAFL	C3YM54	C3ZLP6	KH_dom_type_1 domain-containing protein.	HRDC domain-containing protein.	0.999
C3YM54_BRAFL	C3ZLS8_BRAFL	C3YM54	C3ZLS8	KH_dom_type_1 domain-containing protein.	Uncharacterized protein.	0.999