(23 nodes) Synaptonemal complex network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZR83_BRAFL	Uncharacterized protein. (459 aa)
	C3ZM03_BRAFL	Cor1 domain-containing protein. (242 aa)
	C3ZJ92_BRAFL	Uncharacterized protein. (185 aa)
	C3ZI53_BRAFL	Cor1 domain-containing protein. (1524 aa)
	C3ZHI0_BRAFL	Helicase ATP-binding domain-containing protein. (504 aa)
	C3YX60_BRAFL	Uncharacterized protein. (358 aa)
	C3XT78_BRAFL	Uncharacterized protein. (458 aa)
	C3XR93_BRAFL	DNA_mis_repair domain-containing protein. (362 aa)
	C3XZX7_BRAFL	WAPL domain-containing protein. (1304 aa)
	C3Y458_BRAFL	DNA_mis_repair domain-containing protein. (717 aa)
	C3Y7J4_BRAFL	HORMA domain-containing protein. (202 aa)
	C3Y8N4_BRAFL	Helicase C-terminal domain-containing protein. (591 aa)
	C3YFB0_BRAFL	RING-type domain-containing protein. (304 aa)
	C3ZBQ9_BRAFL	Helicase ATP-binding domain-containing protein. (270 aa)
	C3Z9D8_BRAFL	Peptidylprolyl isomerase. (311 aa)
	C3Z6I4_BRAFL	Uncharacterized protein. (107 aa)
	C3Z1V1_BRAFL	DNA_MISMATCH_REPAIR_2 domain-containing protein. (774 aa)
	C3YZM5_BRAFL	Uncharacterized protein. (453 aa)
	C3YI56_BRAFL	Uncharacterized protein. (162 aa)
	C3YI58_BRAFL	TPR_REGION domain-containing protein. (720 aa)
	C3ZRQ6_BRAFL	RING-type domain-containing protein. (178 aa)
	C3YKR1_BRAFL	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (666 aa)
	C3YW39_BRAFL	Uncharacterized protein. (2614 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XR93_BRAFL	C3Y458_BRAFL	C3XR93	C3Y458	DNA_mis_repair domain-containing protein.	DNA_mis_repair domain-containing protein.	0.997
C3XR93_BRAFL	C3Y7J4_BRAFL	C3XR93	C3Y7J4	DNA_mis_repair domain-containing protein.	HORMA domain-containing protein.	0.497
C3XR93_BRAFL	C3YFB0_BRAFL	C3XR93	C3YFB0	DNA_mis_repair domain-containing protein.	RING-type domain-containing protein.	0.519
C3XR93_BRAFL	C3Z1V1_BRAFL	C3XR93	C3Z1V1	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.930
C3XR93_BRAFL	C3ZRQ6_BRAFL	C3XR93	C3ZRQ6	DNA_mis_repair domain-containing protein.	RING-type domain-containing protein.	0.529
C3XT78_BRAFL	C3Y458_BRAFL	C3XT78	C3Y458	Uncharacterized protein.	DNA_mis_repair domain-containing protein.	0.587
C3XT78_BRAFL	C3YW39_BRAFL	C3XT78	C3YW39	Uncharacterized protein.	Uncharacterized protein.	0.517
C3XT78_BRAFL	C3Z1V1_BRAFL	C3XT78	C3Z1V1	Uncharacterized protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.437
C3XZX7_BRAFL	C3Y7J4_BRAFL	C3XZX7	C3Y7J4	WAPL domain-containing protein.	HORMA domain-containing protein.	0.469
C3Y458_BRAFL	C3XR93_BRAFL	C3Y458	C3XR93	DNA_mis_repair domain-containing protein.	DNA_mis_repair domain-containing protein.	0.997
C3Y458_BRAFL	C3XT78_BRAFL	C3Y458	C3XT78	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.587
C3Y458_BRAFL	C3Y7J4_BRAFL	C3Y458	C3Y7J4	DNA_mis_repair domain-containing protein.	HORMA domain-containing protein.	0.516
C3Y458_BRAFL	C3Y8N4_BRAFL	C3Y458	C3Y8N4	DNA_mis_repair domain-containing protein.	Helicase C-terminal domain-containing protein.	0.587
C3Y458_BRAFL	C3YKR1_BRAFL	C3Y458	C3YKR1	DNA_mis_repair domain-containing protein.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.587
C3Y458_BRAFL	C3YW39_BRAFL	C3Y458	C3YW39	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.792
C3Y458_BRAFL	C3YZM5_BRAFL	C3Y458	C3YZM5	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.587
C3Y458_BRAFL	C3Z1V1_BRAFL	C3Y458	C3Z1V1	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.901
C3Y458_BRAFL	C3Z6I4_BRAFL	C3Y458	C3Z6I4	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.587
C3Y458_BRAFL	C3ZBQ9_BRAFL	C3Y458	C3ZBQ9	DNA_mis_repair domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.587
C3Y458_BRAFL	C3ZHI0_BRAFL	C3Y458	C3ZHI0	DNA_mis_repair domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.587