(28 nodes) RNA polymerase II complex binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZEM7_BRAFL	TFIIS N-terminal domain-containing protein. (295 aa)
	C3XUR6_BRAFL	Uncharacterized protein. (194 aa)
	C3Y0L7_BRAFL	Uncharacterized protein. (249 aa)
	C3Y332_BRAFL	Uncharacterized protein. (1237 aa)
	C3Y529_BRAFL	TPR_REGION domain-containing protein. (1183 aa)
	C3Y7R7_BRAFL	XPGI domain-containing protein. (162 aa)
	C3Y7V3_BRAFL	Uncharacterized protein. (539 aa)
	C3YA64_BRAFL	Uncharacterized protein. (352 aa)
	C3YGP3_BRAFL	WD_REPEATS_REGION domain-containing protein. (657 aa)
	C3YLT3_BRAFL	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family. (82 aa)
	C3YQX8_BRAFL	CID domain-containing protein. (313 aa)
	C3YV22_BRAFL	PCIF1_WW domain-containing protein. (730 aa)
	C3YZS4_BRAFL	Uncharacterized protein. (122 aa)
	C3YZS6_BRAFL	Uncharacterized protein. (425 aa)
	C3Z6V5_BRAFL	Uncharacterized protein. (1415 aa)
	C3Z8Y4_BRAFL	Uncharacterized protein. (736 aa)
	C3Z9H1_BRAFL	Uncharacterized protein. (463 aa)
	C3ZAS4_BRAFL	WW domain-containing protein. (781 aa)
	C3ZB99_BRAFL	CID domain-containing protein. (323 aa)
	C3ZBU2_BRAFL	Uncharacterized protein. (458 aa)
	C3ZCP1_BRAFL	TFIIB-type domain-containing protein. (319 aa)
	C3ZG24_BRAFL	Uncharacterized protein. (536 aa)
	C3ZM90_BRAFL	Uncharacterized protein. (263 aa)
	C3ZQG2_BRAFL	Plus3 domain-containing protein. (605 aa)
	C3ZZX1_BRAFL	CID domain-containing protein. (72 aa)
	C3ZZX7_BRAFL	Uncharacterized protein. (507 aa)
	C4A0Y7_BRAFL	Uncharacterized protein. (416 aa)
	C4A107_BRAFL	Uncharacterized protein. (519 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3Y332_BRAFL	C3YGP3_BRAFL	C3Y332	C3YGP3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.511
C3Y529_BRAFL	C3YA64_BRAFL	C3Y529	C3YA64	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
C3Y529_BRAFL	C3YLT3_BRAFL	C3Y529	C3YLT3	TPR_REGION domain-containing protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.830
C3Y529_BRAFL	C3Z8Y4_BRAFL	C3Y529	C3Z8Y4	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.482
C3Y529_BRAFL	C3ZEM7_BRAFL	C3Y529	C3ZEM7	TPR_REGION domain-containing protein.	TFIIS N-terminal domain-containing protein.	0.917
C3Y529_BRAFL	C3ZG24_BRAFL	C3Y529	C3ZG24	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.999
C3Y529_BRAFL	C3ZQG2_BRAFL	C3Y529	C3ZQG2	TPR_REGION domain-containing protein.	Plus3 domain-containing protein.	0.999
C3Y7R7_BRAFL	C3Y7V3_BRAFL	C3Y7R7	C3Y7V3	XPGI domain-containing protein.	Uncharacterized protein.	0.884
C3Y7R7_BRAFL	C3ZZX7_BRAFL	C3Y7R7	C3ZZX7	XPGI domain-containing protein.	Uncharacterized protein.	0.594
C3Y7V3_BRAFL	C3Y7R7_BRAFL	C3Y7V3	C3Y7R7	Uncharacterized protein.	XPGI domain-containing protein.	0.884
C3YA64_BRAFL	C3Y529_BRAFL	C3YA64	C3Y529	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
C3YA64_BRAFL	C3YLT3_BRAFL	C3YA64	C3YLT3	Uncharacterized protein.	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	0.722
C3YA64_BRAFL	C3Z8Y4_BRAFL	C3YA64	C3Z8Y4	Uncharacterized protein.	Uncharacterized protein.	0.414
C3YA64_BRAFL	C3ZEM7_BRAFL	C3YA64	C3ZEM7	Uncharacterized protein.	TFIIS N-terminal domain-containing protein.	0.470
C3YA64_BRAFL	C3ZG24_BRAFL	C3YA64	C3ZG24	Uncharacterized protein.	Uncharacterized protein.	0.999
C3YA64_BRAFL	C3ZQG2_BRAFL	C3YA64	C3ZQG2	Uncharacterized protein.	Plus3 domain-containing protein.	0.998
C3YGP3_BRAFL	C3Y332_BRAFL	C3YGP3	C3Y332	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.511
C3YLT3_BRAFL	C3Y529_BRAFL	C3YLT3	C3Y529	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	TPR_REGION domain-containing protein.	0.830
C3YLT3_BRAFL	C3YA64_BRAFL	C3YLT3	C3YA64	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	Uncharacterized protein.	0.722
C3YLT3_BRAFL	C3ZEM7_BRAFL	C3YLT3	C3ZEM7	Transcription elongation factor 1 homolog; Transcription elongation factor implicated in the maintenance of proper chromatin structure in actively transcribed regions. Belongs to the ELOF1 family.	TFIIS N-terminal domain-containing protein.	0.906