(4 nodes) RNA polymerase III type 2 promoter sequence-specific DNA binding network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZLL3_BRAFL	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (1049 aa)
	C3YJB3_BRAFL	WD_REPEATS_REGION domain-containing protein. (595 aa)
	C3YV24_BRAFL	Uncharacterized protein. (188 aa)
	C3ZLL7_BRAFL	DUF3385 domain-containing protein. (1400 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3YJB3_BRAFL	C3YV24_BRAFL	C3YJB3	C3YV24	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.665
C3YJB3_BRAFL	C3ZLL3_BRAFL	C3YJB3	C3ZLL3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.989
C3YJB3_BRAFL	C3ZLL7_BRAFL	C3YJB3	C3ZLL7	WD_REPEATS_REGION domain-containing protein.	DUF3385 domain-containing protein.	0.989
C3YV24_BRAFL	C3YJB3_BRAFL	C3YV24	C3YJB3	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.665
C3YV24_BRAFL	C3ZLL3_BRAFL	C3YV24	C3ZLL3	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.611
C3YV24_BRAFL	C3ZLL7_BRAFL	C3YV24	C3ZLL7	Uncharacterized protein.	DUF3385 domain-containing protein.	0.611
C3ZLL3_BRAFL	C3YJB3_BRAFL	C3ZLL3	C3YJB3	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	WD_REPEATS_REGION domain-containing protein.	0.989
C3ZLL3_BRAFL	C3YV24_BRAFL	C3ZLL3	C3YV24	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Uncharacterized protein.	0.611
C3ZLL3_BRAFL	C3ZLL7_BRAFL	C3ZLL3	C3ZLL7	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	DUF3385 domain-containing protein.	0.974
C3ZLL7_BRAFL	C3YJB3_BRAFL	C3ZLL7	C3YJB3	DUF3385 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.989
C3ZLL7_BRAFL	C3YV24_BRAFL	C3ZLL7	C3YV24	DUF3385 domain-containing protein.	Uncharacterized protein.	0.611
C3ZLL7_BRAFL	C3ZLL3_BRAFL	C3ZLL7	C3ZLL3	DUF3385 domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.974