(123 nodes) DNA-binding transcription activator activity, RNA polymerase II-specific network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZQB8_BRAFL	SIX class homeodomain transcription factor. (200 aa)
	Q8T600_BRAFL	Mesenchyme homeobox. (240 aa)
	Gbx	Gastrulation brain homeobox. (252 aa)
	Msx	Muscle segment homeobox. (275 aa)
	C4A047_BRAFL	Uncharacterized protein. (260 aa)
	C4A045_BRAFL	Uncharacterized protein. (344 aa)
	C3ZZ31_BRAFL	Nuclear receptor domain-containing protein. (70 aa)
	C3ZYB3_BRAFL	CP2 domain-containing protein. (601 aa)
	C3ZXQ6_BRAFL	BHLH domain-containing protein. (484 aa)
	C3ZX21_BRAFL	BHLH domain-containing protein. (71 aa)
	C3ZWC1_BRAFL	Uncharacterized protein. (226 aa)
	C3ZWA8_BRAFL	Uncharacterized protein. (550 aa)
	C3ZUY5_BRAFL	GCM domain-containing protein. (121 aa)
	C3ZTN8_BRAFL	Uncharacterized protein. (957 aa)
	C3ZT82_BRAFL	Uncharacterized protein. (694 aa)
	C3ZSZ7_BRAFL	Homeobox domain-containing protein. (149 aa)
	C3ZQ47_BRAFL	Nuclear receptor domain-containing protein. (70 aa)
	C3ZPQ2_BRAFL	Uncharacterized protein. (343 aa)
	C3ZMX3_BRAFL	Homeobox domain-containing protein. (489 aa)
	C3ZMG1_BRAFL	E2F_TDP domain-containing protein. (280 aa)
	C3ZJB7_BRAFL	Homeobox domain-containing protein. (79 aa)
	C3ZJB6_BRAFL	CUT domain-containing protein. (83 aa)
	C3ZIW3_BRAFL	P53 domain-containing protein. (82 aa)
	C3ZIK5_BRAFL	C2H2-type domain-containing protein. (435 aa)
	C3ZIC2_BRAFL	Fork-head domain-containing protein. (86 aa)
	C3ZI75_BRAFL	Uncharacterized protein. (844 aa)
	C3ZI50_BRAFL	GCM domain-containing protein. (606 aa)
	C3ZI18_BRAFL	CBFD_NFYB_HMF domain-containing protein. (415 aa)
	Lhx3a\|Lhx3b	LIM class homeodomain transcription factor, Lhx3 subclass. (402 aa)
	C3ZH92_BRAFL	Uncharacterized protein. (414 aa)
	C3ZE62_BRAFL	IRF tryptophan pentad repeat domain-containing protein. (134 aa)
	C3ZCZ1_BRAFL	TF_AP-2 domain-containing protein. (226 aa)
	C3ZBV0_BRAFL	Uncharacterized protein. (1209 aa)
	C3ZBQ8_BRAFL	Fork-head domain-containing protein. (417 aa)
	C3ZAG1_BRAFL	BHLH domain-containing protein. (81 aa)
	C3Z9S8_BRAFL	CBFD_NFYB_HMF domain-containing protein. (89 aa)
	C3Z744_BRAFL	BZIP domain-containing protein. (100 aa)
	C3Z6H4_BRAFL	Uncharacterized protein. (320 aa)
	C3Z6H2_BRAFL	NR LBD domain-containing protein. (121 aa)
	C3Z6H1_BRAFL	Uncharacterized protein. (491 aa)
	C3Z6C1_BRAFL	Uncharacterized protein. (369 aa)
	C3Z5F1_BRAFL	BHLH domain-containing protein. (56 aa)
	C3Z594_BRAFL	Homeobox domain-containing protein. (406 aa)
	Barh1	BarH-like 1 homeobox protein. (311 aa)
	C3Z3E0_BRAFL	BHLH domain-containing protein. (221 aa)
	C3Z3D9_BRAFL	BHLH domain-containing protein. (233 aa)
	C3Z2E7_BRAFL	Muscle-specific homeobox-like protein. (307 aa)
	C3Z1G9_BRAFL	Uncharacterized protein. (131 aa)
	C3Z1E7_BRAFL	BZIP domain-containing protein. (178 aa)
	C3YZU2_BRAFL	BZIP domain-containing protein. (205 aa)
	C3YZJ2_BRAFL	Uncharacterized protein. (758 aa)
	C3YZJ0_BRAFL	Uncharacterized protein. (228 aa)
	C3YZC9_BRAFL	Homeobox domain-containing protein. (69 aa)
	C3YXH3_BRAFL	Uncharacterized protein. (416 aa)
	C3YX65_BRAFL	Uncharacterized protein. (144 aa)
	C3YVG9_BRAFL	Uncharacterized protein. (473 aa)
	C3YUD5_BRAFL	ETS domain-containing protein. (133 aa)
	C3YU56_BRAFL	Uncharacterized protein. (91 aa)
	C3YU08_BRAFL	BZIP domain-containing protein. (652 aa)
	C3YS40_BRAFL	Uncharacterized protein. (505 aa)
	C3YS20_BRAFL	POU domain protein. (166 aa)
	C3YQP4_BRAFL	BZIP domain-containing protein; Belongs to the bZIP family. (321 aa)
	C3YQA1_BRAFL	BZIP domain-containing protein. (244 aa)
	C3XPU2_BRAFL	Uncharacterized protein. (649 aa)
	C3Y559_BRAFL	ETS domain-containing protein. (87 aa)
	C3XQE6_BRAFL	Uncharacterized protein. (443 aa)
	C3XR02_BRAFL	Uncharacterized protein. (352 aa)
	C3XR03_BRAFL	Uncharacterized protein. (242 aa)
	C3XRB0_BRAFL	Uncharacterized protein. (399 aa)
	C3XRR1_BRAFL	BHLH domain-containing protein. (223 aa)
	C3XSG5_BRAFL	Uncharacterized protein. (470 aa)
	C3XU65_BRAFL	BZIP domain-containing protein. (375 aa)
	C3XU82_BRAFL	C2H2-type domain-containing protein. (171 aa)
	C3XUD7_BRAFL	Uncharacterized protein. (486 aa)
	C3XUQ3_BRAFL	Uncharacterized protein. (375 aa)
	C3XUQ6_BRAFL	NR LBD domain-containing protein. (167 aa)
	C3XWK0_BRAFL	Uncharacterized protein. (497 aa)
	C3XWL3_BRAFL	C2H2-type domain-containing protein. (254 aa)
	C3XWL4_BRAFL	BHLH domain-containing protein. (342 aa)
	C3XWM6_BRAFL	Homeobox domain-containing protein. (391 aa)
	C3XY75_BRAFL	Uncharacterized protein. (148 aa)
	C3XYA9_BRAFL	Uncharacterized protein. (440 aa)
	C3XYZ3_BRAFL	MADS-box domain-containing protein. (534 aa)
	C3XZF2_BRAFL	Uncharacterized protein. (329 aa)
	C3XZX0_BRAFL	IRF tryptophan pentad repeat domain-containing protein. (132 aa)
	C3Y0Z0_BRAFL	Uncharacterized protein. (645 aa)
	C3Y106_BRAFL	PNT domain-containing protein. (297 aa)
	C3Y1D9_BRAFL	HMG box domain-containing protein. (389 aa)
	C3Y1H3_BRAFL	Uncharacterized protein. (422 aa)
	C3Y1W9_BRAFL	BZIP domain-containing protein. (423 aa)
	C3Y213_BRAFL	BHLH domain-containing protein. (170 aa)
	C3Y214_BRAFL	BHLH domain-containing protein. (210 aa)
	C3Y215_BRAFL	BHLH domain-containing protein. (191 aa)
	C3Y216_BRAFL	BHLH domain-containing protein. (157 aa)
	C3Y268_BRAFL	MADS-box domain-containing protein. (450 aa)
	C3Y3V0_BRAFL	BZIP domain-containing protein. (598 aa)
	C3YQ89_BRAFL	BZIP domain-containing protein. (135 aa)
	C3YPI9_BRAFL	BHLH domain-containing protein. (206 aa)
	C3YLD9_BRAFL	Uncharacterized protein. (276 aa)
	C3YKT6_BRAFL	SAND domain-containing protein. (103 aa)
	C3YJL0_BRAFL	Homeobox protein-like protein. (318 aa)
	C3YJJ6_BRAFL	Homeobox protein-like protein. (317 aa)
	C3YIY2_BRAFL	Uncharacterized protein. (460 aa)
	C3YIU8_BRAFL	Uncharacterized protein. (848 aa)
	C3YIU7_BRAFL	Uncharacterized protein. (1125 aa)
	C3YI85_BRAFL	Uncharacterized protein. (596 aa)
	C3YG28_BRAFL	BHLH domain-containing protein. (240 aa)
	C3YFZ2_BRAFL	BZIP domain-containing protein. (671 aa)
	C3YFD8_BRAFL	RHD domain-containing protein. (217 aa)
	C3YEV5_BRAFL	Uncharacterized protein. (359 aa)
	C3YDQ8_BRAFL	Mothers against decapentaplegic homolog. (559 aa)
	C3YCF3_BRAFL	DM domain-containing protein. (562 aa)
	C3YB90_BRAFL	ETS domain-containing protein. (493 aa)
	C3YAW5_BRAFL	Fork-head domain-containing protein. (110 aa)
	C3Y9J2_BRAFL	IRF tryptophan pentad repeat domain-containing protein. (114 aa)
	C3Y908_BRAFL	Uncharacterized protein. (835 aa)
	C3Y772_BRAFL	Uncharacterized protein. (769 aa)
	C3Y634_BRAFL	ETS domain-containing protein. (90 aa)
	C3Y5N8_BRAFL	HMG box domain-containing protein. (472 aa)
	C3Y5N0_BRAFL	ETS domain-containing protein. (290 aa)
	C3Y5J1_BRAFL	Uncharacterized protein. (504 aa)
	C3Y5D5_BRAFL	Uncharacterized protein. (341 aa)
	C3Y5D4_BRAFL	Uncharacterized protein. (530 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Barh1	C3Z3D9_BRAFL	C3Z546	C3Z3D9	BarH-like 1 homeobox protein.	BHLH domain-containing protein.	0.452
Barh1	C3Z3E0_BRAFL	C3Z546	C3Z3E0	BarH-like 1 homeobox protein.	BHLH domain-containing protein.	0.452
C3XR03_BRAFL	C3Y5N0_BRAFL	C3XR03	C3Y5N0	Uncharacterized protein.	ETS domain-containing protein.	0.480
C3XR03_BRAFL	C3Y634_BRAFL	C3XR03	C3Y634	Uncharacterized protein.	ETS domain-containing protein.	0.471
C3XR03_BRAFL	C3ZQ47_BRAFL	C3XR03	C3ZQ47	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.411
C3XR03_BRAFL	C3ZZ31_BRAFL	C3XR03	C3ZZ31	Uncharacterized protein.	Nuclear receptor domain-containing protein.	0.419
C3XRR1_BRAFL	C3ZAG1_BRAFL	C3XRR1	C3ZAG1	BHLH domain-containing protein.	BHLH domain-containing protein.	0.676
C3XU65_BRAFL	C3YQP4_BRAFL	C3XU65	C3YQP4	BZIP domain-containing protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.416
C3XU65_BRAFL	C3Z744_BRAFL	C3XU65	C3Z744	BZIP domain-containing protein.	BZIP domain-containing protein.	0.629
C3XUD7_BRAFL	C3YDQ8_BRAFL	C3XUD7	C3YDQ8	Uncharacterized protein.	Mothers against decapentaplegic homolog.	0.524
C3XWK0_BRAFL	C3YQP4_BRAFL	C3XWK0	C3YQP4	Uncharacterized protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.401
C3XYZ3_BRAFL	C3Y268_BRAFL	C3XYZ3	C3Y268	MADS-box domain-containing protein.	MADS-box domain-containing protein.	0.591
C3XYZ3_BRAFL	C3YG28_BRAFL	C3XYZ3	C3YG28	MADS-box domain-containing protein.	BHLH domain-containing protein.	0.434
C3XYZ3_BRAFL	C3YIY2_BRAFL	C3XYZ3	C3YIY2	MADS-box domain-containing protein.	Uncharacterized protein.	0.413
C3XYZ3_BRAFL	C3YQP4_BRAFL	C3XYZ3	C3YQP4	MADS-box domain-containing protein.	BZIP domain-containing protein; Belongs to the bZIP family.	0.464
C3XYZ3_BRAFL	C3YUD5_BRAFL	C3XYZ3	C3YUD5	MADS-box domain-containing protein.	ETS domain-containing protein.	0.884
C3XYZ3_BRAFL	C3YVG9_BRAFL	C3XYZ3	C3YVG9	MADS-box domain-containing protein.	Uncharacterized protein.	0.450
C3XYZ3_BRAFL	C3Z1E7_BRAFL	C3XYZ3	C3Z1E7	MADS-box domain-containing protein.	BZIP domain-containing protein.	0.479
C3XYZ3_BRAFL	C3ZBQ8_BRAFL	C3XYZ3	C3ZBQ8	MADS-box domain-containing protein.	Fork-head domain-containing protein.	0.436
C3XYZ3_BRAFL	C3ZMX3_BRAFL	C3XYZ3	C3ZMX3	MADS-box domain-containing protein.	Homeobox domain-containing protein.	0.410