(35 nodes) Leukocyte mediated immunity network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3ZQU3_BRAFL	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (456 aa)
	C3XSF4_BRAFL	Uncharacterized protein. (1251 aa)
	C3XTK2_BRAFL	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (905 aa)
	C3XU65_BRAFL	BZIP domain-containing protein. (375 aa)
	C3XYP6_BRAFL	Uncharacterized protein. (657 aa)
	C3Y3U5_BRAFL	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (303 aa)
	C3Y3Z5_BRAFL	Uncharacterized protein. (146 aa)
	C3Y458_BRAFL	DNA_mis_repair domain-containing protein. (717 aa)
	C3Y5H3_BRAFL	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (470 aa)
	C3Y5T7_BRAFL	Spondin domain-containing protein. (679 aa)
	C3Y922_BRAFL	Uncharacterized protein. (546 aa)
	C3Y937_BRAFL	Uncharacterized protein. (427 aa)
	C3Y9A3_BRAFL	ATPase_AAA_core domain-containing protein. (2025 aa)
	C3YAN7_BRAFL	Uncharacterized protein. (68 aa)
	C3YBE6_BRAFL	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (246 aa)
	C3YEQ0_BRAFL	DUF3342 domain-containing protein. (546 aa)
	C3YJ60_BRAFL	WD_REPEATS_REGION domain-containing protein. (534 aa)
	C3YKZ1_BRAFL	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (264 aa)
	C3YM54_BRAFL	KH_dom_type_1 domain-containing protein. (186 aa)
	C3YMN6_BRAFL	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR). (1278 aa)
	C3YPE7_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (447 aa)
	C3YPP6_BRAFL	Spondin domain-containing protein. (176 aa)
	C3YRG9_BRAFL	Uncharacterized protein. (1042 aa)
	C3YRU5_BRAFL	Uncharacterized protein; Belongs to the synaptobrevin family. (220 aa)
	C3YZ01_BRAFL	DNA ligase. (793 aa)
	C3Z1H5_BRAFL	SEFIR domain-containing protein. (163 aa)
	C3Z1H6_BRAFL	SEFIR domain-containing protein. (238 aa)
	C3Z4R4_BRAFL	TPR_REGION domain-containing protein. (698 aa)
	C3Z734_BRAFL	Uncharacterized protein. (275 aa)
	C3Z9D3_BRAFL	Uncharacterized protein. (281 aa)
	C3ZET3_BRAFL	RING-type domain-containing protein. (121 aa)
	C3ZLJ9_BRAFL	Uncharacterized protein. (139 aa)
	C3ZLV0_BRAFL	Uncharacterized protein; Belongs to the peptidase S1 family. (369 aa)
	C3ZQU4_BRAFL	Pept_C1 domain-containing protein; Belongs to the peptidase C1 family. (456 aa)
	Q8T751_BRAFL	MORN-like. (158 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XSF4_BRAFL	C3XYP6_BRAFL	C3XSF4	C3XYP6	Uncharacterized protein.	Uncharacterized protein.	0.788
C3XSF4_BRAFL	C3ZLV0_BRAFL	C3XSF4	C3ZLV0	Uncharacterized protein.	Uncharacterized protein; Belongs to the peptidase S1 family.	0.788
C3XTK2_BRAFL	C3Y458_BRAFL	C3XTK2	C3Y458	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA_mis_repair domain-containing protein.	0.997
C3XTK2_BRAFL	C3Y937_BRAFL	C3XTK2	C3Y937	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.917
C3XTK2_BRAFL	C3YMN6_BRAFL	C3XTK2	C3YMN6	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.999
C3XTK2_BRAFL	C3YZ01_BRAFL	C3XTK2	C3YZ01	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA ligase.	0.791
C3XTK2_BRAFL	C3Z4R4_BRAFL	C3XTK2	C3Z4R4	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	TPR_REGION domain-containing protein.	0.961
C3XTK2_BRAFL	C3Z734_BRAFL	C3XTK2	C3Z734	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	Uncharacterized protein.	0.961
C3XYP6_BRAFL	C3XSF4_BRAFL	C3XYP6	C3XSF4	Uncharacterized protein.	Uncharacterized protein.	0.788
C3Y3U5_BRAFL	C3YKZ1_BRAFL	C3Y3U5	C3YKZ1	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	0.905
C3Y3U5_BRAFL	C3YMN6_BRAFL	C3Y3U5	C3YMN6	Uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.498
C3Y3Z5_BRAFL	C3YRU5_BRAFL	C3Y3Z5	C3YRU5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.541
C3Y458_BRAFL	C3XTK2_BRAFL	C3Y458	C3XTK2	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.997
C3Y458_BRAFL	C3Y937_BRAFL	C3Y458	C3Y937	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.828
C3Y458_BRAFL	C3YMN6_BRAFL	C3Y458	C3YMN6	DNA_mis_repair domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.996
C3Y458_BRAFL	C3YZ01_BRAFL	C3Y458	C3YZ01	DNA_mis_repair domain-containing protein.	DNA ligase.	0.771
C3Y458_BRAFL	C3Z4R4_BRAFL	C3Y458	C3Z4R4	DNA_mis_repair domain-containing protein.	TPR_REGION domain-containing protein.	0.962
C3Y458_BRAFL	C3Z734_BRAFL	C3Y458	C3Z734	DNA_mis_repair domain-containing protein.	Uncharacterized protein.	0.962
C3Y922_BRAFL	C3YRU5_BRAFL	C3Y922	C3YRU5	Uncharacterized protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.405
C3Y922_BRAFL	Q8T751_BRAFL	C3Y922	Q8T751	Uncharacterized protein.	MORN-like.	0.606