(30 nodes) Positive regulation of production of molecular mediator of immune response network (Branchiostoma floridae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C3XZR9_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (335 aa)
	C3XTK2_BRAFL	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR). (905 aa)
	C3XVR6_BRAFL	BZIP domain-containing protein. (242 aa)
	Thop1.1	BZIP domain-containing protein. (336 aa)
	C3XYL0_BRAFL	Uncharacterized protein. (897 aa)
	C3XZX1_BRAFL	Uncharacterized protein. (655 aa)
	C3Y381_BRAFL	Elp3 domain-containing protein. (343 aa)
	C3Y458_BRAFL	DNA_mis_repair domain-containing protein. (717 aa)
	C3Y547_BRAFL	SET domain-containing protein. (312 aa)
	C3Y5T7_BRAFL	Spondin domain-containing protein. (679 aa)
	C3Y7F3_BRAFL	Protein kinase domain-containing protein. (702 aa)
	C3Y9A3_BRAFL	ATPase_AAA_core domain-containing protein. (2025 aa)
	C3YBF4_BRAFL	Uncharacterized protein. (2359 aa)
	C3YFF1_BRAFL	Uncharacterized protein. (733 aa)
	C3YKX2_BRAFL	Deacetylase sirtuin-type domain-containing protein. (312 aa)
	C3YL98_BRAFL	DUF3456 domain-containing protein. (196 aa)
	C3YM54_BRAFL	KH_dom_type_1 domain-containing protein. (186 aa)
	C3YPG5_BRAFL	Polyphenol oxidase; Belongs to the multicopper oxidase YfiH/RL5 family. (355 aa)
	C3YPP6_BRAFL	Spondin domain-containing protein. (176 aa)
	C3YUP9_BRAFL	Protein kinase domain-containing protein. (925 aa)
	C3YXH0_BRAFL	Uncharacterized protein. (327 aa)
	C3YXI3_BRAFL	Uncharacterized protein. (119 aa)
	C3Z2Q0_BRAFL	J domain-containing protein. (104 aa)
	C3Z629_BRAFL	Prohibitin. (276 aa)
	C3Z8U0_BRAFL	Uncharacterized protein. (572 aa)
	C3ZBX8_BRAFL	Glucose-6-phosphate isomerase; Belongs to the GPI family. (557 aa)
	C3ZIA7_BRAFL	Helicase C-terminal domain-containing protein. (118 aa)
	C3ZNP8_BRAFL	Protein kinase domain-containing protein. (634 aa)
	C3ZPZ7_BRAFL	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (451 aa)
	C3ZSP0_BRAFL	BZIP domain-containing protein. (404 aa)

Your Current Organism:

Branchiostoma floridae

NCBI taxonomy Id: 7739
Other names: Amphioxus floridae, B. floridae, Florida lancelet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C3XTK2_BRAFL	C3Y458_BRAFL	C3XTK2	C3Y458	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	DNA_mis_repair domain-containing protein.	0.997
C3XVR6_BRAFL	C3Z2Q0_BRAFL	C3XVR6	C3Z2Q0	BZIP domain-containing protein.	J domain-containing protein.	0.462
C3XYL0_BRAFL	C3YL98_BRAFL	C3XYL0	C3YL98	Uncharacterized protein.	DUF3456 domain-containing protein.	0.540
C3XZR9_BRAFL	C3ZNP8_BRAFL	C3XZR9	C3ZNP8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.534
C3XZX1_BRAFL	C3YFF1_BRAFL	C3XZX1	C3YFF1	Uncharacterized protein.	Uncharacterized protein.	0.690
C3XZX1_BRAFL	C3ZIA7_BRAFL	C3XZX1	C3ZIA7	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.760
C3Y458_BRAFL	C3XTK2_BRAFL	C3Y458	C3XTK2	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.997
C3Y547_BRAFL	C3YBF4_BRAFL	C3Y547	C3YBF4	SET domain-containing protein.	Uncharacterized protein.	0.493
C3Y7F3_BRAFL	C3ZNP8_BRAFL	C3Y7F3	C3ZNP8	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.494
C3YBF4_BRAFL	C3Y547_BRAFL	C3YBF4	C3Y547	Uncharacterized protein.	SET domain-containing protein.	0.493
C3YFF1_BRAFL	C3XZX1_BRAFL	C3YFF1	C3XZX1	Uncharacterized protein.	Uncharacterized protein.	0.690
C3YFF1_BRAFL	C3ZIA7_BRAFL	C3YFF1	C3ZIA7	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.753
C3YKX2_BRAFL	C3Z2Q0_BRAFL	C3YKX2	C3Z2Q0	Deacetylase sirtuin-type domain-containing protein.	J domain-containing protein.	0.495
C3YL98_BRAFL	C3XYL0_BRAFL	C3YL98	C3XYL0	DUF3456 domain-containing protein.	Uncharacterized protein.	0.540
C3YUP9_BRAFL	C3ZNP8_BRAFL	C3YUP9	C3ZNP8	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.545
C3Z2Q0_BRAFL	C3XVR6_BRAFL	C3Z2Q0	C3XVR6	J domain-containing protein.	BZIP domain-containing protein.	0.462
C3Z2Q0_BRAFL	C3YKX2_BRAFL	C3Z2Q0	C3YKX2	J domain-containing protein.	Deacetylase sirtuin-type domain-containing protein.	0.495
C3Z2Q0_BRAFL	C3ZSP0_BRAFL	C3Z2Q0	C3ZSP0	J domain-containing protein.	BZIP domain-containing protein.	0.462
C3Z2Q0_BRAFL	Thop1.1	C3Z2Q0	C3XVS7	J domain-containing protein.	BZIP domain-containing protein.	0.462
C3Z8U0_BRAFL	C3ZNP8_BRAFL	C3Z8U0	C3ZNP8	Uncharacterized protein.	Protein kinase domain-containing protein.	0.679